PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0388.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 631aa MW: 73991.4 Da PI: 8.2368

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0388.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.1	5.3e-22	54	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFs+r++k+++++ + + t+r+fvCskeg+++ +k++ k++ +r+ trtgC+a ++ + +++g + v++ e +H+H+++ Kaladp0008s0388.1.p 54 LYNDYARRIGFSIRRAKQRYRRGESSLTMRQFVCSKEGTKNAKKDS--KRSYSRNITRTGCQAFIQFSIDQEGCYTVQRHEMDHTHDFS 140 6*************************************999888..9999********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-19	54	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-30	263	356	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.26	567	605	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence Send to blast
MADMSTFKKP DMLESEVPGT SDESIRTQRA KFFEAQNSEL IGLVVESEEA AYALYNDYAR 60 RIGFSIRRAK QRYRRGESSL TMRQFVCSKE GTKNAKKDSK RSYSRNITRT GCQAFIQFSI 120 DQEGCYTVQR HEMDHTHDFS DIRQRHLMRS QRSISDEQIE LLKSFRKCGI KLSDAIRFLK 180 CQYGGSPNIG FINIDAYNAL ANPDCKSFNG SDAKTLIEIF KERQENEDDF FYNFDLDEDG 240 RLCGFFWRDG IMKKDYDLFG DLVVHDTTYR TNKYDMICGP FVGMNQHTNN VMFGCGFIIN 300 ERVESFVWLF QSFLKSMGDK APITIMTDES AAMAAGIKKV FPTSKHRLCI WHIIKNSKER 360 IISLRKRDGF IHLFNHLLNG CDSEAEFNFY WQRYVYTYTI LNFLMNIEVF SDKSILFYRM 420 ITVYNCVDNP WIIKFYKTKE KWCGTFCKEF FSGGILSSQR SETTNKSVSR RLNKLSGLCE 480 FYYTFCEVVS EWRSNEMKFN YSNSNGIPEM VVSNSNLLRH ARDVYTRNIY KKFEDRFLDG 540 ISCTQMIVPS EPNVFCYNVW REGIDMFRHY VRFSAETFLV ECTCKCFTQD GLLCMHSLRV 600 LNIHCVQRIP DAYILKRWRK DIRKDCQESD *

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence Send to blast

MADMSTFKKP DMLESEVPGT SDESIRTQRA KFFEAQNSEL IGLVVESEEA AYALYNDYAR  60
RIGFSIRRAK QRYRRGESSL TMRQFVCSKE GTKNAKKDSK RSYSRNITRT GCQAFIQFSI  120
DQEGCYTVQR HEMDHTHDFS DIRQRHLMRS QRSISDEQIE LLKSFRKCGI KLSDAIRFLK  180
CQYGGSPNIG FINIDAYNAL ANPDCKSFNG SDAKTLIEIF KERQENEDDF FYNFDLDEDG  240
RLCGFFWRDG IMKKDYDLFG DLVVHDTTYR TNKYDMICGP FVGMNQHTNN VMFGCGFIIN  300
ERVESFVWLF QSFLKSMGDK APITIMTDES AAMAAGIKKV FPTSKHRLCI WHIIKNSKER  360
IISLRKRDGF IHLFNHLLNG CDSEAEFNFY WQRYVYTYTI LNFLMNIEVF SDKSILFYRM  420
ITVYNCVDNP WIIKFYKTKE KWCGTFCKEF FSGGILSSQR SETTNKSVSR RLNKLSGLCE  480
FYYTFCEVVS EWRSNEMKFN YSNSNGIPEM VVSNSNLLRH ARDVYTRNIY KKFEDRFLDG  540
ISCTQMIVPS EPNVFCYNVW REGIDMFRHY VRFSAETFLV ECTCKCFTQD GLLCMHSLRV  600
LNIHCVQRIP DAYILKRWRK DIRKDCQESD *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154343.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_019179493.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-97	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0008s0388.1.p