PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0008s0226.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 325aa MW: 35618.8 Da PI: 5.6235

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0008s0226.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.5	1.8e-28	31	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rWt+qe+l+Li+++r +e+r+rrg+ + +p+W++vs++++++g++r+++qC+++w+nl+++ykkike+e++ ++e++s +++ Kaladp0008s0226.1.p 31 RWTRQEILVLIQGKRVVETRVRRGRasgltfgpgQVEPKWASVSSYCKRHGVNRGAVQCRKRWSNLAGDYKKIKEWESQTKEETESFWVM 120 8********************97778888888*******************************************99999999999 PP trihelix 82 fdqle 86 ++l+ Kaladp0008s0226.1.p 121 RNDLR 125 99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.2E-13	31	121	No hit	No description
PROSITE profile	PS50090	6.353	31	97	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-4	31	96	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0050777	Biological Process	negative regulation of immune response
GO:0071219	Biological Process	cellular response to molecule of bacterial origin
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MALSLAVDGG DADGVAAVAA EETAKAPRLP RWTRQEILVL IQGKRVVETR VRRGRASGLT 60 FGPGQVEPKW ASVSSYCKRH GVNRGAVQCR KRWSNLAGDY KKIKEWESQT KEETESFWVM 120 RNDLRREKKL PGFFDREVYD ILEGDSPATC LALALGPALQ ADADDAEAVF DSGRTTAAAA 180 AQDGLFSDED DGNETPLSKE SPPTRVAAPL PISEKVYQPY SSSAQADARN EKEPAGHQEG 240 GSSSQDARKR RRYTVEDGDV EPTLSLQDKL IRVLERNGEM LRSQLQAQNN NLQLDREQRK 300 DNAASVVGVL NKLADALVKI AEKL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	251	RKRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00288	DAP	Transfer from AT2G33550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012088721.1	1e-141	trihelix transcription factor ASR3
Swissprot	Q8VZ20	1e-107	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A067JH78	1e-139	A0A067JH78_JATCU; Uncharacterized protein
STRING	XP_002512665.1	1e-134	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-101	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kaladp0008s0226.1.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]