PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0007s0087.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 396aa    MW: 44270.8 Da    PI: 7.671
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0007s0087.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.11.9e-23216268255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          p+l+Wt++LH++F+ a++ L G ekA Pk+i e+m+v gLt+++v SHLQkYR 
  Kaladp0007s0087.1.p 216 PKLVWTTQLHNKFLCALDIL-GLEKAQPKKIHEVMNVAGLTRANVVSHLQKYRH 268
                          89******************.********************************5 PP
2Response_reg65.52.5e-2271171109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                          +l+vdD+ +  +++  +l+  +y ev+ a++g eal +l  ++   +D ++ D+ mp+m+G+el k+i  e p++p+ +++a ++  ++l
  Kaladp0007s0087.1.p   7 ILVVDDDYTCSKVIGGILNAWKY-EVEFAKNGVEALSILYSEKdvtIDGVVADVHMPEMNGFELQKHIIVEFPNIPVFLMSADDKTHTLL 95 
                          89*********************.***************6666688**********************99999***************** PP

                          HHHHTTESEEEESS--HHHHHH CS
         Response_reg  88 ealkaGakdflsKpfdpeelvk 109
                          + l+ Ga  +  Kp++ +el +
  Kaladp0007s0087.1.p  96 RGLNGGAVLYMHKPVSTAELKN 117
                          ******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.9E-302122No hitNo description
SuperFamilySSF521722.56E-293124IPR011006CheY-like superfamily
SMARTSM004485.3E-225119IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.0416123IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-207117IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.08E-238120No hitNo description
Gene3DG3DSA:1.10.10.604.9E-23214272IPR009057Homeodomain-like
SuperFamilySSF466891.77E-16214272IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-20215268IPR006447Myb domain, plants
PfamPF002493.0E-6218267IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MLRPLKILVV DDDYTCSKVI GGILNAWKYE VEFAKNGVEA LSILYSEKDV TIDGVVADVH  60
MPEMNGFELQ KHIIVEFPNI PVFLMSADDK THTLLRGLNG GAVLYMHKPV STAELKNIWQ  120
FIYRYSGKAI MNDHTENFSE DVGGSSCGSS TPGDPHFIAV SGAATQLWEG NSNAVEDPLK  180
MYNTRCVQHA DGMQIREAIV NNNAPLPVVP RTGNNPKLVW TTQLHNKFLC ALDILGLEKA  240
QPKKIHEVMN VAGLTRANVV SHLQKYRHFL KRVENQGSRH GECRVIPNRS FTSIMRAGYV  300
PLYYRLKHVD PTDKPRLYRM LQEDLIAMRI PSYSQRYSCP GSTNYLPFKL GSGLMWPKGK  360
HHPMSYNGVE DVTAALDNLQ MGTPFEELPN GASEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17216273663ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-46response regulator 2