PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0005s0032.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 188aa    MW: 21280.3 Da    PI: 4.3743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0005s0032.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-16243548
                         -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
  Kaladp0005s0032.2.p  2 TAQEEHLVLELHAKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43
                         99****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.651147IPR017930Myb domain
CDDcd001671.41E-11143No hitNo description
SMARTSM007173.8E-10145IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-12249IPR009057Homeodomain-like
PfamPF002492.0E-14242IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-19244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MTAQEEHLVL ELHAKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKALEQ KQTTSSSMTS  60
SDSSSSSNPT LDSLSPDTEK ESFYDTGGLV AEPSLDGNKQ AQEIVDRGYS MDDIWKDLDM  120
TDESPISQLY GTFSEGSNFY CPPPVSPVWD NCSSSFWKLD DEESKMFLPS TNLPTYYDLT  180
EAPSYGY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019076057.13e-56PREDICTED: transcription factor MYB59
RefseqXP_022730937.14e-57transcription factor MYB48-like
TrEMBLA0A438G1I06e-55A0A438G1I0_VITVI; Transcription factor MYB59
STRINGVIT_06s0004g04140.t011e-55(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.17e-40myb domain protein 59