PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0004s0009.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 360aa    MW: 39942.3 Da    PI: 9.8421
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0004s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.41.1e-31293350359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers e+p+++++tYegeHnh+
  Kaladp0004s0009.1.p 293 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERSLEEPTMLIVTYEGEHNHP 350
                          99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105337.8E-16245289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.0E-33279351IPR003657WRKY domain
PROSITE profilePS5081130.515286352IPR003657WRKY domain
SuperFamilySSF1182908.76E-27289351IPR003657WRKY domain
SMARTSM007744.3E-38291351IPR003657WRKY domain
PfamPF031065.4E-27293350IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEGVEGANRA AVESCNKVLS LLSQPSAAPD ELLCCRNLTV ETGEAVGKFR RVVSMLGRTV  60
GHARARMSKN LPMPEVPLSK EFESTQIENV DHQAGSFLSL NSNLGENIKQ ESGPSVTRSI  120
VCSENPSLSL EIGLNYNNQP AQTGKPQQIM SAQQHHQLLQ QQRMQQHQLM KYRFQQQQQA  180
DMMFSKSNSG ISLNFESSSC TPTMSSNRSF MSSLSMDGSI ANPNGGVLQY FGASRSLDQN  240
LQLQKRKCKG RGENGSLKCG SSRCHCSKKR KHRVKRSIKV PAISNKLADI PPDDYSWRKY  300
GQKPIKGSPY PRGYYKCSSM RGCPARKHVE RSLEEPTMLI VTYEGEHNHP RMQTQTADA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21284349771WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026033.11e-133PREDICTED: probable WRKY transcription factor 21
RefseqXP_011026034.11e-133PREDICTED: probable WRKY transcription factor 21
TrEMBLV7BGP81e-131V7BGP8_PHAVU; Uncharacterized protein
STRINGXP_007144701.11e-132(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.18e-83WRKY DNA-binding protein 21