PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0003s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 407aa MW: 46495.7 Da PI: 6.4045 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.5e-52 | 16 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi++vd++k+ePwd+++++k +++wyfFs++dkky+tg+r+nrat++g+Wkatg Kaladp0003s0027.1.p 16 VPPGFRFHPTEEELLHYYLRKKVASQKIDL-DVIRDVDLNKLEPWDIQERCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATG 104 69****************************.9***************964444222455******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk ++s ++ +g++ktLvfy grap+g+k+dW+mheyrl Kaladp0003s0027.1.p 105 RDKVIYS-CSRRIGMRKTLVFYMGRAPHGQKSDWIMHEYRL 144 *******.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-58 | 12 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.398 | 16 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-27 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 407 aa Download sequence Send to blast |
MCSENMNLSV NGHSQVPPGF RFHPTEEELL HYYLRKKVAS QKIDLDVIRD VDLNKLEPWD 60 IQERCKIGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKVIY SCSRRIGMRK 120 TLVFYMGRAP HGQKSDWIMH EYRLDDNTTA HNTNDASNQL LVGESMQEDG WVVCRVFTKK 180 NYQKASDSPK NSFISSSRPS QMQRDSNTNP VLDQILLYMG KNCNQLENEN KMNSRLLDTH 240 HNNQDASMQF IHPDLSQFDE EIIHEKFLHL PRLEGSPACY PSSMEETMIM ANRSSERVSD 300 WVALDRLVAS QLNGGHVSEM IFDQTSRQLS CMSSDPNSNM PTFDFSQQHN DGPLLSELPL 360 NHFNRSTNQE SSQQVYCSEQ VDLWTFSSNH GSSSNSSSDP LGQLSV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-52 | 16 | 181 | 15 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269|PubMed:17114348, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250, ECO:0000269|PubMed:17565617, ECO:0000269|PubMed:17890373}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00016 | PBM | Transfer from AT1G32770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279545.1 | 1e-145 | PREDICTED: NAC domain-containing protein 43 | ||||
Swissprot | Q9LPI7 | 1e-116 | NAC12_ARATH; NAC domain-containing protein 12 | ||||
TrEMBL | F6HU82 | 1e-144 | F6HU82_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0025g02710.t01 | 1e-144 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32770.1 | 1e-107 | NAC domain containing protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0003s0027.1.p |