PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0003s0022.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 956aa MW: 104676 Da PI: 6.5942

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0003s0022.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91	9.4e-29	603	653	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Kaladp0003s0022.2.p 603 EKTISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 653 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.598	592	673	IPR003035	RWP-RK domain
Pfam	PF02042	6.3E-26	605	653	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.0E-5	904	944	No hit	No description
SuperFamily	SSF54277	2.51E-7	905	943	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MAEPDDDKAS SRFPLHSHHQ SRSSRDPPPD SHHLMDLDLD LDSFWPLDQI SFATNPMSPL 60 LISSSDQPFS PLWAFSDADD DNKPSSASAK QAALSAAAAF RLPDYPRFLA LKSAYTDTTN 120 GIPADNDEKR RMQSLPPSSP LWGLEPDVSC VIKEKMTQAL RYFKESTEQH VLAQVWAPVK 180 NGGRYVLTTS EQPFVLDPHS SGLNRYRMVS LMYMFCVDEE SDGELGLPGR VFRQKLPEWT 240 PNVQYYSSQE YSRLDHALHY NVQGTLALPV FESSGQTCVG VVELILTSQK INYAPEVDKV 300 CKALEAVNLK SSNILDHPKP QIRNEGRQKA LAEILEVLSV VCESLKLPLA QTWVPCRHRN 360 VLADGGGLRK SCSSFDGSCM GQVCMSTSDV TFYVVDAHLW GFRDACAEHH LQRGQGVAGR 420 AFLSQSSCFC GDITKFSKTE YPLVHYARLF GVTSCFAICL CSSLTGNDEY ILEFFLPPTV 480 IDARDQHTLL NSLLETMKQH FRSLRVASGR NLGEDMIEIV EGSADEKLLE SVRRSHSASP 540 PAPDTTNGRE TCDKISTVNL VLEEANGSNN AMNAAGLGGI TSGGTLMGNT VTKKPERKRG 600 KTEKTISLDV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLTKL 660 KRVIESVQGS ESTFGLTSLS PTPLPAAGCS MSWAANANGS NLPNSPGLRT AGLQGMKSES 720 PECKSPISDG KDGNGVHLPG SKTLDPEGCP NEENEYIPKI SKTSSGSREG SAGSPTSHGS 780 CQGSAPHETN VAQYSKTPEL CEPYINIEAP LRNHQGKELD LAMTNFVPDT RLSTQAQEPF 840 EGLLVADVGS SKNLRNLCPS IADAHIEDRH PECSWTNSHV PIPASEPATT ANPTPHLTGR 900 RDSVTLTIKA TYKDDIIRFR FLSNSGIVEL REEVAKRLKL ETFKNVLMCR DQVEV*

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MAEPDDDKAS SRFPLHSHHQ SRSSRDPPPD SHHLMDLDLD LDSFWPLDQI SFATNPMSPL  60
LISSSDQPFS PLWAFSDADD DNKPSSASAK QAALSAAAAF RLPDYPRFLA LKSAYTDTTN  120
GIPADNDEKR RMQSLPPSSP LWGLEPDVSC VIKEKMTQAL RYFKESTEQH VLAQVWAPVK  180
NGGRYVLTTS EQPFVLDPHS SGLNRYRMVS LMYMFCVDEE SDGELGLPGR VFRQKLPEWT  240
PNVQYYSSQE YSRLDHALHY NVQGTLALPV FESSGQTCVG VVELILTSQK INYAPEVDKV  300
CKALEAVNLK SSNILDHPKP QIRNEGRQKA LAEILEVLSV VCESLKLPLA QTWVPCRHRN  360
VLADGGGLRK SCSSFDGSCM GQVCMSTSDV TFYVVDAHLW GFRDACAEHH LQRGQGVAGR  420
AFLSQSSCFC GDITKFSKTE YPLVHYARLF GVTSCFAICL CSSLTGNDEY ILEFFLPPTV  480
IDARDQHTLL NSLLETMKQH FRSLRVASGR NLGEDMIEIV EGSADEKLLE SVRRSHSASP  540
PAPDTTNGRE TCDKISTVNL VLEEANGSNN AMNAAGLGGI TSGGTLMGNT VTKKPERKRG  600
KTEKTISLDV LQQYFAGSLK DAAKSLGVCP TTMKRICRQH GISRWPSRKI NKVNRSLTKL  660
KRVIESVQGS ESTFGLTSLS PTPLPAAGCS MSWAANANGS NLPNSPGLRT AGLQGMKSES  720
PECKSPISDG KDGNGVHLPG SKTLDPEGCP NEENEYIPKI SKTSSGSREG SAGSPTSHGS  780
CQGSAPHETN VAQYSKTPEL CEPYINIEAP LRNHQGKELD LAMTNFVPDT RLSTQAQEPF  840
EGLLVADVGS SKNLRNLCPS IADAHIEDRH PECSWTNSHV PIPASEPATT ANPTPHLTGR  900
RDSVTLTIKA TYKDDIIRFR FLSNSGIVEL REEVAKRLKL ETFKNVLMCR DQVEV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010659716.1	0.0	PREDICTED: protein NLP6
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	F6HU52	0.0	F6HU52_VITVI; Uncharacterized protein
STRING	VIT_02s0025g02070.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Kaladp0003s0022.2.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]