PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0002s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 398aa MW: 43704.9 Da PI: 7.974 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.9 | 3e-17 | 52 | 112 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Kaladp0002s0011.1.p 52 KPRWNPKPEQIRILEGIFNSgMVNPPRDEIRKIRTQLqeygQVGDANVFYWFQNRKSRSKH 112 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 110.6 | 8.5e-36 | 51 | 113 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe +++sG+++P+++ei++i+++L+eyG+++d+NVfyWFQNrk+R+++k Kaladp0002s0011.1.p 51 PKPRWNPKPEQIRILEGIFNSGMVNPPRDEIRKIRTQLQEYGQVGDANVFYWFQNRKSRSKHK 113 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-12 | 46 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.268 | 48 | 113 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-7 | 50 | 117 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-6 | 51 | 120 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.61E-8 | 51 | 114 | No hit | No description |
Pfam | PF00046 | 8.9E-15 | 52 | 112 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCNPH QQWPHEFSSS LLTGCHINPY TSGIEERSPE PKPRWNPKPE 60 QIRILEGIFN SGMVNPPRDE IRKIRTQLQE YGQVGDANVF YWFQNRKSRS KHKNRQVPKS 120 QQNQSNQPAA GRTTTNPSIP ATTTPANSSS IKTSSSDKSS PKLINSSKNS TSPAGFSLGS 180 CSSNLLDQLA YSPATSVNQN YDQLVQHDQP FMFPLQHLNF TAQGFPGFPD HQQIMMANRN 240 NNNLINNNVP HSVGPCTEFL FSELISSQHG VGSDPKKDAE DEEKLMIMKL GFSTAPSAAS 300 TVGNNLPLSA SNVMTLPSTL NQLQGAGEYS GPVAVGPIKL TVFINDVAFE VNCGPFHVRE 360 AFGDDAVLLH STGQPVLTNE WGVTLQPLQH GAFYYLI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020230917.1 | 1e-123 | WUSCHEL-related homeobox 9 | ||||
TrEMBL | B8YI24 | 1e-119 | B8YI24_PHACN; WOX9-like protein | ||||
STRING | EOY28117 | 1e-120 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-56 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0002s0011.1.p |