PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0258.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 381aa    MW: 42106 Da    PI: 8.898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0258.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.7e-12151197455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++N+++  L  ++P +     kK +Ka++L +A++Y+k+Lq
  Kaladp0001s0258.1.p 151 DHIVAERKRREKLNQRIIALSAVVPGL-----KKKDKASVLAEAIKYLKQLQ 197
                          5899***********************.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-17151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-10151197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16152212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-12152201No hitNo description
SMARTSM003532.5E-12153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEASACGGFF QGLMDDESLI NQWMTNSHED LSALLLPVAA ATFSDYDLQH SLLYDYQQPP  60
AKQLKTNSWD SCLIDPKPSP DTHNNSAAVA ASFLYPANPP QFTIGTSRLD CTVWNSENNH  120
ILKSGHDHQG AKRKFRITSD AATTRSSGAQ DHIVAERKRR EKLNQRIIAL SAVVPGLKKK  180
DKASVLAEAI KYLKQLQERV KILEEQTKGN KTTQSAVVLR KAKLIIADDD ANQKPFSGEM  240
FIEGTPTEEL LPEIEARVCE RNVLIRIHCD KKKGVLEKTL SEIVKLRLTL VSSSVITFGS  300
SALDITIAAQ VNFRSRSKAR STLINIAHAH LLHTHRQFSS ISLSIKLNNS TIGSAYILLY  360
IYTDLFNFLR ADGGGMLSDS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERKRRE
2156161RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844450.13e-77PREDICTED: transcription factor bHLH25-like
TrEMBLA0A2I4GKM46e-76A0A2I4GKM4_JUGRE; transcription factor bHLH25-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-44bHLH family protein