PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0172.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 323aa    MW: 34897.1 Da    PI: 8
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0172.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-29158216158
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +C+vkkkv+rsaed+++++ tY geHnh
  Kaladp0001s0172.1.p 158 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCQVKKKVQRSAEDQTMLVATYDGEHNH 216
                          58***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-28149219IPR003657WRKY domain
PROSITE profilePS5081125.97153219IPR003657WRKY domain
SuperFamilySSF1182903.4E-24154219IPR003657WRKY domain
SMARTSM007742.4E-32158218IPR003657WRKY domain
PfamPF031062.2E-23159216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEPSAWIDSS LSLALNLNPH YHPHPHPHPA PPPKPQIKEA EELAEELSRV IGENRKLTEM  60
LAAMYESYTA LQTQFEDLMR RTSAGSAKRK SPESGGDGVQ TDQSSSSSDD ESNVFKKPRE  120
SCSGGNCGGG AVAAGLMSRK PSSRVLVRID KSDTSLIVKD GYQWRKYGQK VTRDNPSPRA  180
YFKCSFAPSC QVKKKVQRSA EDQTMLVATY DGEHNHLPPS ETELPPHRSP VTTTNSVASS  240
AIGSSKPTVT LDLIQPVEEA RLDRAGSGAA EGQDSRPVFQ RFIVEQMASS LTNDPGFKAA  300
VAAVISGRMM DGNKGGMLGK WL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-191572191375WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A061G9D96e-80A0A061G9D9_THECC; WRKY DNA-binding protein 40, putative isoform 2
TrEMBLA0A061GA777e-80A0A061GA77_THECC; WRKY DNA-binding protein 40, putative isoform 1
STRINGEOY260521e-80(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.26e-62WRKY DNA-binding protein 18