PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0001s0103.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 259aa MW: 28367.5 Da PI: 8.7989 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.1 | 8.1e-17 | 57 | 106 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d s ++ r +lg+f+ aeeAa+a++ a++ l+g Kaladp0001s0103.1.p 57 RFLGVRQRP-SGRWVAEIKDTS---QKLRLWLGTFDKAEEAAAAYDSAARLLRG 106 678******.7*********42...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.35E-17 | 56 | 115 | No hit | No description |
PROSITE profile | PS51032 | 19.941 | 57 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-32 | 57 | 120 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-10 | 58 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-7 | 58 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-19 | 58 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-28 | 58 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-7 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDSTKAACSD YQPHSRQPAT STCHIFSASK AHPFEEAKHS SNLCKRSGIN KGLIKTRFLG 60 VRQRPSGRWV AEIKDTSQKL RLWLGTFDKA EEAAAAYDSA ARLLRGRNAK TNFPVGHGVM 120 GTQENCSLLR KNPRLYNLLQ HAVLKNQARS RSVSTWRCPS TSSNQGRYNE TETGSTVVFD 180 TLVDETFNAC GSSLSDQNND RALNINDFVF PSSCSSSSKV YSSVVVAPSF STCFNEEDRP 240 LEEKGSYSTE CGTSQGAQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 47 | 119 | 4 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008393384.3 | 5e-61 | ethylene-responsive transcription factor RAP2-11-like | ||||
TrEMBL | F6GTG5 | 1e-58 | F6GTG5_VITVI; Uncharacterized protein | ||||
STRING | VIT_17s0000g04480.t01 | 2e-59 | (Vitis vinifera) | ||||
STRING | XP_008393384.1 | 1e-59 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 3e-19 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0001s0103.1.p |