PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0001s0060.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family BBR-BPC
Protein Properties Length: 346aa    MW: 38695.4 Da    PI: 9.3509
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0001s0060.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind363.93.1e-11113451301
            GAGA_bind   1 mdddgsre..rnkg.yye........paaslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalver 77 
                          mdd g+re  r+++ +y+        +     +++   +q+m+++aerda+i+ernlalsekk a+aerd aflqrd+a++ern+a++er
  Kaladp0001s0060.3.p   1 MDDGGHREngRHRAdQYKaaqsqwlmQ-----HHQpsMKQIMTIMAERDAAIQERNLALSEKKTAMAERDLAFLQRDNAINERNNAIMER 85 
                          9*****9999****99*9654333331.....3322146*************************************************** PP

            GAGA_bind  78 dnkllalllvensla.........salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrq 154
                          dn+l++l+++e+ ++         +++p+g+q+++g+k++++ qq+      +q ++ +++ r+++++ea  ++  a++a +++    ++
  Kaladp0001s0060.3.p  86 DNALATLQYRETPMNgdngmsqiqTQCPSGCQISRGVKHLHHPQQHVLddenQQHTEAPYNSRDMDITEAISLSPVASDAAKSRG---NK 172
                          ************999999**999999******************94324677888999999999998887776554444444333...44 PP

            GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesad.er............................skaekksidlvlngvslDestlPvPvCsC 215
                          r+k+pk+  ++kk +k++   +kvkk s+  ++                             k+++k +dl+ln v +D++ +P+PvCsC
  Kaladp0001s0060.3.p 173 RTKEPKSVSSNKKVQKNP---NKVKKGSDGfSKhmfgkthewgderdmgsgsddvnkqivvLKSDWKGQDLGLNLVVYDDTIMPPPVCSC 259
                          555555444443333232...233333322222356677889999********************************************* PP

            GAGA_bind 216 tGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          tG  rqCYkWGnGGWqS+CCtt+iS+yPLP ++++r+aR++grKmS+gaf+klL++LaaeG+dl +pvDLkd WAkHGtn+++ti+
  Kaladp0001s0060.3.p 260 TGNFRQCYKWGNGGWQSSCCTTSISQYPLPSVPNKRHARVGGRKMSGGAFNKLLSRLAAEGHDLTKPVDLKDNWAKHGTNRYITIK 345
                          *************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.9E-1571345IPR010409GAGA-binding transcriptional activator
PfamPF062175.1E-981345IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDDGGHRENG RHRADQYKAA QSQWLMQHHQ PSMKQIMTIM AERDAAIQER NLALSEKKTA  60
MAERDLAFLQ RDNAINERNN AIMERDNALA TLQYRETPMN GDNGMSQIQT QCPSGCQISR  120
GVKHLHHPQQ HVLDDENQQH TEAPYNSRDM DITEAISLSP VASDAAKSRG NKRTKEPKSV  180
SSNKKVQKNP NKVKKGSDGF SKHMFGKTHE WGDERDMGSG SDDVNKQIVV LKSDWKGQDL  240
GLNLVVYDDT IMPPPVCSCT GNFRQCYKWG NGGWQSSCCT TSISQYPLPS VPNKRHARVG  300
GRKMSGGAFN KLLSRLAAEG HDLTKPVDLK DNWAKHGTNR YITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354256.11e-180protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354257.11e-180protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354258.11e-180protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354259.11e-180protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354260.11e-180protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354261.11e-180protein BASIC PENTACYSTEINE6 isoform X1
SwissprotQ8L9991e-141BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A0L9V9701e-178A0A0L9V970_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RAS61e-178A0A0S3RAS6_PHAAN; Uncharacterized protein
TrEMBLA0A371G1G21e-178A0A371G1G2_MUCPR; Protein BASIC PENTACYSTEINE6 (Fragment)
STRINGcassava4.1_029314m1e-177(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-137basic pentacysteine 6