PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl01320_0030
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C2H2
Protein Properties Length: 605aa    MW: 67742.1 Da    PI: 10.7215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl01320_0030genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-052145123
                   EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                   ++C    Cg++F+ +++L+ H+r+H
  kfl01320_0030 21 FVCDfaGCGETFTGPEYLTCHLRSH 45
                   89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.8E-81945IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00962145IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3232150IPR007087Zinc finger, C2H2
PROSITE patternPS0002802345IPR007087Zinc finger, C2H2
SuperFamilySSF540602.47E-756159No hitNo description
SMARTSM005079.896157IPR003615HNH nuclease
Gene3DG3DSA:1.10.10.104.4E-4180227IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF540603.65E-12257338No hitNo description
SMARTSM0050728291340IPR003615HNH nuclease
PfamPF133922.4E-8296337IPR003615HNH nuclease
Gene3DG3DSA:1.10.10.101.6E-4390434IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF540602.0E-11464553No hitNo description
SMARTSM005070.17496547IPR003615HNH nuclease
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MASGPVGVKR KHGQINGPKQ FVCDFAGCGE TFTGPEYLTC HLRSHSKQNA PPTSYEGWKQ  60
HYKYKHIFGL PDGQVWSCRS GRFLKGTKFN GYVQLEIDGK KIQRHCLNFE IAHGRAIASG  120
MDIDHIIPSP TPKDGSERQP QDDSWANLQE LTRWEHNSKT LADNPDSGKK RGATQGFPII  180
ALHATSGREE RYSSITEAAS ALGLKLSTVK LRIRQGSSEE YGGHVFRRCP VHVAEQADRP  240
GEEWKDAKLD GRLIRGIRVS SLGRVQLRDG RRTEGKVKHG RHKVGLEVDG KDVQVFVHIL  300
MVHTFIGPPP SDKHTVDHID GNCRRNVSGN LRWATKTRRP ASAGSRHSMM HRVTAKAVFF  360
ALGLWFLVAD NPRASKKGGV TKGFPVMALH VASGKENLHA SVRAAASTLG LTLATVQKRI  420
RQGSSKEYRG YIFRRCPKHT AEQDDRPGEV WKDAELHGRL IKGIRVSTMG RVQLQFGRRT  480
EGWIVNNRRN VNLRVDGRTK VVKLYVLMAH TFIGRPPSAE HTVDHIDGNS IHDVIWNLRW  540
ATRVEQGRNI KSNRAVHKYD LQGTLLQTYD TIAEAAEKNR LSRGQVKYAA STGSTVTRFC  600
WVFVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1IQK20.0A0A1Y1IQK2_KLENI; HNH nuclease