PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00979_0030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | SBP | ||||||||
Protein Properties | Length: 828aa MW: 87405.3 Da PI: 9.4085 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 118.5 | 3.3e-37 | 33 | 109 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C +egC adls k+yh+rhkvCevh++a+++l++g+ rfCqqCsrfh + efDe+krsCrrrL +hn+rrrkk+ kfl00979_0030 33 VCLIEGCGADLSGSKDYHQRHKVCEVHARAASALHKGQLMRFCQQCSRFHPVAEFDEGKRSCRRRLLGHNKRRRKKE 109 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-30 | 31 | 95 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.017 | 31 | 108 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.11E-34 | 32 | 109 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.1E-30 | 34 | 108 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 828 aa Download sequence Send to blast |
MNSSGNAHKS SGSLERHDSD KRPRPSFAGA SIVCLIEGCG ADLSGSKDYH QRHKVCEVHA 60 RAASALHKGQ LMRFCQQCSR FHPVAEFDEG KRSCRRRLLG HNKRRRKKED PASEPDDHPA 120 PHRPHFNMAT SALPYDAHEE VRRRKGAAAP EHTPPRRLGQ GLSLSPFSPH EAAPASDGPS 180 LSQFLRDSGV APRAPDGSLS SLLMGAPPQQ TADFLGRTLG LSASQQLLLG FQPQRSANQE 240 LKPEARNTLQ LHFPPSSATS LLPAAGARQS PSLQQLLDKS AGGHSLSSPG RHATAGGEAS 300 SLFPLPNSLE AGGSPWAGQL EGLVGGQRGG GLNHNSAPYL PQDRTGRISF KLFDKNPNDL 360 PDDLRDQILD WLQRRPSAME TYLRPGCVHV SAYLAMPHPD WDALERDLLP LLAGLVRSQA 420 WAGGTFTAFT TSMEAHVEQG VVQRVCPLTP AQGPVLLSVH PRCLVAGQPV EMTVTGRGLL 480 HANNRLVCLH NGQRFLDSRP SAAPARPGTS SGRGLPVSWS HDDDAPLAPS PPRCGGQEWS 540 PRVGAGPVGP SSWSADPVTG VETLVWTMAG PPPEARGSMF LEVDRGGCPS NMKPLLVADA 600 ALAAELAQLD AQLHSSGPPD SAARRAAESS ADALVADLGW ALGGQRKEGK SARLAAWARE 660 RGWRHTAERI RGSGGPAEVP SGERAAFSGK AARRAASAAM GVPGVPGQAA PDNMTLNGTR 720 KENLGALHSS VKQGTREQGA AGKPSPVWQQ VVRQAPGGGG QLGSKGGQQV PVGFGCTIGT 780 GPWQGEAGAA RRLVTAVYSA AISRTRVCLS EREPAQTVCS LVWGPVCV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-27 | 33 | 107 | 10 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 24 | KRPRP |
2 | 103 | 108 | RRRKKE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00060 | PBM | Transfer from AT3G60030 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1ISR5 | 0.0 | A0A1Y1ISR5_KLENI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76580.1 | 4e-26 | SBP family protein |