PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00824_0050

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

C2H2

Protein Properties

Length: 495aa MW: 56137 Da PI: 9.4366

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00824_0050	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.7	2.2e-06	119	143	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cg++F++k +L+rH r+H kfl00824_0050 119 FVCNvvGCGETFTDKRYLTRHSRSH 143 89*********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.9E-7	115	143	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.76E-5	116	146	No hit	No description
PROSITE profile	PS50157	12.466	119	148	IPR007087	Zinc finger, C2H2
SMART	SM00355	3.6E-4	119	143	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	121	143	IPR007087	Zinc finger, C2H2
SuperFamily	SSF54060	1.53E-7	156	258	No hit	No description
SMART	SM00507	0.037	194	255	IPR003615	HNH nuclease
CDD	cd00085	1.48E-5	201	258	No hit	No description
Gene3D	G3DSA:1.10.10.10	2.1E-5	284	324	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF54060	1.65E-10	355	444	No hit	No description
SMART	SM00507	0.5	388	438	IPR003615	HNH nuclease
CDD	cd00085	0.00225	406	440	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence Send to blast
MYRWQDVLTA SLDKYGGPGG LNAAEDASRS KQRKRGEPRR LRTDVAVKLM NESDPEGNVD 60 EIVDDLDEMR FYREHTTYWT ETLYSSSEQQ SLMASSTAAT SVTAGVKRKR GQVADTRRFV 120 CNVVGCGETF TDKRYLTRHS RSHSEQNAPP ASYDGWKQHY KFMNIYGLPD GSVWSCEVGR 180 FLKGRFKSGY IQFNINGQMI QRHRLNFEIA HGRAISPGME IDHIIPSPKP EDGSERPLQN 240 DSWANLQELT RPEHQRKTAR DNPGSGQKRS VTGGFPIIVR HVASSKEERY SSIRDAASTL 300 GLDRKTMQKC IQGGSSKEYG GYMFFRCSVH VVDQADRPSE EWKDAKLDGR VLRSIRVSSL 360 GRVQLSNGRR TEGNIVCGRH KVELQIAGKR VTVCVYNLMA HTFIGPPPSD EHTVDHIDGI 420 CDQDVIWNLR WATRVEQNRN RTINRAVRKH DLEGKLLQTY STIAEAAEKN DLSWQQVDYA 480 TRMGSTATGF LWTKI

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence Send to blast

MYRWQDVLTA SLDKYGGPGG LNAAEDASRS KQRKRGEPRR LRTDVAVKLM NESDPEGNVD  60
EIVDDLDEMR FYREHTTYWT ETLYSSSEQQ SLMASSTAAT SVTAGVKRKR GQVADTRRFV  120
CNVVGCGETF TDKRYLTRHS RSHSEQNAPP ASYDGWKQHY KFMNIYGLPD GSVWSCEVGR  180
FLKGRFKSGY IQFNINGQMI QRHRLNFEIA HGRAISPGME IDHIIPSPKP EDGSERPLQN  240
DSWANLQELT RPEHQRKTAR DNPGSGQKRS VTGGFPIIVR HVASSKEERY SSIRDAASTL  300
GLDRKTMQKC IQGGSSKEYG GYMFFRCSVH VVDQADRPSE EWKDAKLDGR VLRSIRVSSL  360
GRVQLSNGRR TEGNIVCGRH KVELQIAGKR VTVCVYNLMA HTFIGPPPSD EHTVDHIDGI  420
CDQDVIWNLR WATRVEQNRN RTINRAVRKH DLEGKLLQTY STIAEAAEKN DLSWQQVDYA  480
TRMGSTATGF LWTKI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1ILH1	0.0	A0A1Y1ILH1_KLENI; HNH nuclease