PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00779_0040

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

GATA

Protein Properties

Length: 1212aa MW: 123693 Da PI: 10.169

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00779_0040	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	41.9	1.4e-13	278	307	1	30
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30 C+ Cgt +++ WRrgpdg+ktLCn+CGl + kfl00779_0040 278 CHYCGTRESTYWRRGPDGPKTLCNSCGLNW 307 99**************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	10.739	272	305	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.95E-11	272	310	No hit	No description
SMART	SM00401	4.2E-7	272	321	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.4E-11	277	312	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.27E-11	278	312	No hit	No description
Pfam	PF00320	1.7E-10	278	307	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1212 aa Download sequence Send to blast
MGAVKVWFLK WPHAAATVLI YSWLASGAAS RQHSVFDEDA IAIRVACLSR DAVIGGIVWV 60 QAGGQHPFNH RQSNNMDPSA MPLTAPSKAS SLPSPHSAED QNGNQSSGSA EPTPLPAITP 120 SPKPGHEAVR RANKRSLADT VKMRTRGALA EDTATAEASQ LEGVAKKRAK AAKVETGGGP 180 AASPRAPPPT HSQDAGEPNI LTGRGGQDET RFEDFGSSPG AALDGLGCGA QAEARQAVGD 240 AGATQAHAGQ AAGRKGGGKS ERKVAPSPAA KVGGDIHCHY CGTRESTYWR RGPDGPKTLC 300 NSCGLNWFRQ RPMQREQVEV GNLMAAAVAA AALKRPANSL KDGPEKRKRE EKKDGKQLLE 360 QLHGTKGAHA QQQPGAKRRK GDGGAGAGKP ERAGGQAVAS SLKGLQRTEK GSIRRKLGDA 420 AVKKAALIKR TPSQLSLVGL LESAAAAPPA PPELPPAAAV KPTGVLKGAR FSPLKQAQTR 480 LGAQKLLAVL NVIKQKKGLG RVTSTASLES VPEEDPLAAQ PDGIPGISGS GVPGGTEVLA 540 SSQDALRGGW EPGPTGASTR RPTKTGARSQ RRPNTALLQG ASFLPWKARP RGWESSSLTF 600 AAAESRLLKP QAAAPAAHGR SPLQTRAEAG PIGAGPEQEG VGGGNRGAAP DPQQRARLRE 660 GGSHEAAAGG AEAGEGGSDD DGFAGYGVLR KLLEEVDAPP TSPPAKGRPP LNKKGGAPLA 720 KKLQRSEQPL GSQGPSARAG LNSYESFEDL VMGTAGGMKR FESFEDLALR VGPVFARVES 780 FEELALRAGP AMRRFESFED LAMRSQPVVE PPPHPAPSAL PAAHVAGRGE GESSAEAGSE 840 GEAGSRDGAG RRSGREKKQK TWEWAVVDGP KRRRKDARDD KGLPREGPDG PAPWRSGTAQ 900 GQRKGEPGQA LQPPRGSQGR GRGGAQQFPG MLGPGESPTA GSLESAQRGE GTEEPVLPND 960 ASGSAEGRLL AAPGQAGGLP QHSAGAAAAG QPGAALLPNG LRYALRVPAA AQPSGSAGPT 1020 ASLARNVLGL GPRGVSARAL HLLVDCAVEP EPAADVATLM ADLQTLAIGT ADKRGGSDGG 1080 QEQGRAADGA AGGMKAGFAA SFTLPNGRAV KQVAPVAHAV RLPAGAEVAS DGAAEGRGGG 1140 VIVELGAPEA GPPAAEQEDG AVGPSKATSV TPRGAPAAVD KDARAAQLLQ VPAGEPELHC 1200 AEVLQSPEDL PC

Sequence ? help Back to Top

Protein Sequence Length: 1212 aa Download sequence Send to blast

MGAVKVWFLK WPHAAATVLI YSWLASGAAS RQHSVFDEDA IAIRVACLSR DAVIGGIVWV  60
QAGGQHPFNH RQSNNMDPSA MPLTAPSKAS SLPSPHSAED QNGNQSSGSA EPTPLPAITP  120
SPKPGHEAVR RANKRSLADT VKMRTRGALA EDTATAEASQ LEGVAKKRAK AAKVETGGGP  180
AASPRAPPPT HSQDAGEPNI LTGRGGQDET RFEDFGSSPG AALDGLGCGA QAEARQAVGD  240
AGATQAHAGQ AAGRKGGGKS ERKVAPSPAA KVGGDIHCHY CGTRESTYWR RGPDGPKTLC  300
NSCGLNWFRQ RPMQREQVEV GNLMAAAVAA AALKRPANSL KDGPEKRKRE EKKDGKQLLE  360
QLHGTKGAHA QQQPGAKRRK GDGGAGAGKP ERAGGQAVAS SLKGLQRTEK GSIRRKLGDA  420
AVKKAALIKR TPSQLSLVGL LESAAAAPPA PPELPPAAAV KPTGVLKGAR FSPLKQAQTR  480
LGAQKLLAVL NVIKQKKGLG RVTSTASLES VPEEDPLAAQ PDGIPGISGS GVPGGTEVLA  540
SSQDALRGGW EPGPTGASTR RPTKTGARSQ RRPNTALLQG ASFLPWKARP RGWESSSLTF  600
AAAESRLLKP QAAAPAAHGR SPLQTRAEAG PIGAGPEQEG VGGGNRGAAP DPQQRARLRE  660
GGSHEAAAGG AEAGEGGSDD DGFAGYGVLR KLLEEVDAPP TSPPAKGRPP LNKKGGAPLA  720
KKLQRSEQPL GSQGPSARAG LNSYESFEDL VMGTAGGMKR FESFEDLALR VGPVFARVES  780
FEELALRAGP AMRRFESFED LAMRSQPVVE PPPHPAPSAL PAAHVAGRGE GESSAEAGSE  840
GEAGSRDGAG RRSGREKKQK TWEWAVVDGP KRRRKDARDD KGLPREGPDG PAPWRSGTAQ  900
GQRKGEPGQA LQPPRGSQGR GRGGAQQFPG MLGPGESPTA GSLESAQRGE GTEEPVLPND  960
ASGSAEGRLL AAPGQAGGLP QHSAGAAAAG QPGAALLPNG LRYALRVPAA AQPSGSAGPT  1020
ASLARNVLGL GPRGVSARAL HLLVDCAVEP EPAADVATLM ADLQTLAIGT ADKRGGSDGG  1080
QEQGRAADGA AGGMKAGFAA SFTLPNGRAV KQVAPVAHAV RLPAGAEVAS DGAAEGRGGG  1140
VIVELGAPEA GPPAAEQEDG AVGPSKATSV TPRGAPAAVD KDARAAQLLQ VPAGEPELHC  1200
AEVLQSPEDL PC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	170	AKKRAKA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1IMQ3	0.0	A0A1Y1IMQ3_KLENI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	7e-08	ZIM-like 1