PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00738_0030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C2H2 | ||||||||
Protein Properties | Length: 448aa MW: 49797.5 Da PI: 6.4118 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00055 | 136 | 160 | 2 | 23 |
EET...TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp...dCgksFsrksnLkrHirtH 23 kC+ C+ F r+++L+ H rtH kfl00738_0030 136 KCSyymGCNAAFARRDTLTLHERTH 160 6888889*****************9 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00018 | 166 | 189 | 1 | 22 |
EEET..TTTEEESSHHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt 22 + C+ C++ Fsr++ Lk+H kfl00738_0030 166 FACSeaGCDEAFSRSDALKTHVFY 189 679999***************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-10 | 122 | 157 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 3.7 | 135 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.131 | 135 | 165 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.68E-11 | 146 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-11 | 158 | 187 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.263 | 166 | 196 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.027 | 166 | 191 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 168 | 191 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MVGLLGLVQL VAERAPWAAE QARPLCCHRG HPSVLELGWE TLLGLEWGLR WGLQLVWVLD 60 SRLEVAEGGL VADLVAGSAV WVLDSRLEVA EGSVSLLAGV GESSVLSLEA GCGALLKRGD 120 TLLRHERTHN DEKALKCSYY MGCNAAFARR DTLTLHERTH SGIKPFACSE AGCDEAFSRS 180 DALKTHVFYY HTEKGQQRRK REEERIAKLL TTAGLPFKRE HHVTFDCLGG SFARIDFILD 240 HKGKIIVIEV DEYQHEGYGV ACDVARMLQI YEAWAIEGNS LPVHIIRYNP HTFQIDGKRA 300 AVTRKIREAR LLEAINEAAE MESEGLDQPR RRYHGRARSG NQVAPRRAFV GSGQGARREG 360 LSAELRRIKK ERELEAEMNP SPGPIPDPVI PDDPMHVDPI PALEVPNDPM QVDPQVAAQP 420 VVLQPSWTAK ERAYESTTDG PQAPQENR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2wbs_A | 4e-14 | 110 | 187 | 11 | 85 | KRUEPPEL-LIKE FACTOR 4 |
2wbu_A | 4e-14 | 110 | 187 | 12 | 86 | KRUEPPEL-LIKE FACTOR 4 |
4m9e_A | 4e-14 | 110 | 187 | 10 | 84 | Krueppel-like factor 4 |
5ke6_A | 5e-14 | 110 | 187 | 15 | 89 | Krueppel-like factor 4 |
5ke7_A | 5e-14 | 110 | 187 | 15 | 89 | Krueppel-like factor 4 |
5ke8_A | 5e-14 | 110 | 187 | 15 | 89 | Krueppel-like factor 4 |
5ke9_A | 5e-14 | 110 | 187 | 15 | 89 | Krueppel-like factor 4 |
5kea_A | 4e-14 | 110 | 187 | 15 | 89 | Krueppel-like factor 4 |
5keb_A | 4e-14 | 110 | 187 | 15 | 89 | Krueppel-like factor 4 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1ISL5 | 0.0 | A0A1Y1ISL5_KLENI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 4e-09 | relative of early flowering 6 |