PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00734_0080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C2H2 | ||||||||
Protein Properties | Length: 515aa MW: 59487.7 Da PI: 6.8127 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.4 | 3e-06 | 357 | 381 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ dCg++F ++ nL+ H + H kfl00734_0080 357 HSCTypDCGRTFATPGNLRDHENEH 381 689999***************9998 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.7e-05 | 387 | 411 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+Cp Cg+ Fs+k + rH ++H kfl00734_0080 387 YQCPfeGCGMAFSSKTVMCRHVKKH 411 9***********************9 PP | |||||||
3 | zf-C2H2 | 15.2 | 6.2e-05 | 415 | 439 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk+F ++ L +H++ H kfl00734_0080 415 HICPyeGCGKRFAFRERLITHQKIH 439 689********************99 PP | |||||||
4 | zf-C2H2 | 16.9 | 1.8e-05 | 447 | 469 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp C+k+F+ +L+ H+rtH kfl00734_0080 447 CPweGCDKTFKWANSLHGHMRTH 469 9999******************9 PP | |||||||
5 | zf-C2H2 | 17.3 | 1.4e-05 | 475 | 499 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ +Cg+ F k +L+rH rtH kfl00734_0080 475 FQCTwpNCGRQFGYKVDLTRHERTH 499 899999******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.4E-8 | 354 | 381 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 13.318 | 357 | 386 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0019 | 357 | 381 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 359 | 381 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.5E-10 | 367 | 426 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.0E-9 | 382 | 412 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.91 | 387 | 416 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.5E-5 | 387 | 411 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 389 | 411 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.5E-9 | 413 | 443 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.066 | 415 | 444 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0018 | 415 | 439 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 417 | 439 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.84E-16 | 426 | 478 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-14 | 444 | 468 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.274 | 445 | 474 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 9.8E-5 | 445 | 469 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 447 | 469 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-16 | 469 | 501 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.23E-9 | 469 | 502 | No hit | No description |
PROSITE profile | PS50157 | 13.277 | 475 | 504 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.5E-4 | 475 | 499 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 477 | 499 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MMADRERYMQ GEPEPDERHG AFHVQGEGQH GGSHEHYQAS DQEGRGWSER VDQEEDDRSR 60 HEELDMEVEL RGEEVPVHEE DEEEGEDARR HQQATHMGLA GHQGYLQVPM QYRRDGALEE 120 EEQQRLEEQQ RGQLLQYTAL GGTILDSHSL NLALAQQQLA HQQLAQQQLA QQQLAQQQLA 180 QQQLVHQHLA HQQMAVAGPG MQHGEAIPLM GMGKQSKKRR KLKRLEIDLD PISYQKLMKL 240 VNDQFEGSVE RFLSASLAHV ELPEKPGKKD PYSASRKPAL TKWKRLRFEH LRGGDSHELS 300 LAHRSLLETL EASGQQHYPL DITPQLRDIP WEDLTIPQLE KMLDEVKRML IMTEKVHSCT 360 YPDCGRTFAT PGNLRDHENE HRGHRPYQCP FEGCGMAFSS KTVMCRHVKK HERAHICPYE 420 GCGKRFAFRE RLITHQKIHS DERPLHCPWE GCDKTFKWAN SLHGHMRTHT GEKPFQCTWP 480 NCGRQFGYKV DLTRHERTHY GQPARRAVEV PHGGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 3e-32 | 387 | 497 | 23 | 128 | Lysine-specific demethylase REF6 |
6a58_A | 3e-32 | 387 | 497 | 23 | 128 | Lysine-specific demethylase REF6 |
6a59_A | 3e-32 | 387 | 497 | 23 | 128 | Lysine-specific demethylase REF6 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 216 | 220 | KKRRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002983078.2 | 1e-105 | zinc finger protein 26 | ||||
TrEMBL | A0A1Y1ISJ7 | 0.0 | A0A1Y1ISJ7_KLENI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP15242 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 3e-32 | relative of early flowering 6 |