PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00702_0050

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

ERF

Protein Properties

Length: 687aa MW: 76448 Da PI: 6.1239

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00702_0050	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35	3.5e-11	636	672	14	55
AP2 14 rWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +WvA+Ird + +++lg+f taeeA +a+++a+++++g kfl00702_0050 636 KWVAQIRD------QgMKVHLGTFETAEEAGRAYDEAALRIHG 672 8*****......44**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16903	6.8E-36	1	168	IPR031654	Major capsid protein, N-terminal
SuperFamily	SSF49749	1.1E-39	1	176	IPR016112	Group II dsDNA virus coat/capsid protein
Gene3D	G3DSA:2.70.9.10	6.9E-40	1	177	IPR016111	Hexon coat protein, subdomain 4
Pfam	PF04451	9.0E-16	171	261	IPR007542	Virus, major capsid protein, C-terminal
Gene3D	G3DSA:2.70.9.20	2.5E-15	179	262	IPR016114	African swine fever virus, p72, major capsid
SuperFamily	SSF49749	1.46E-12	179	261	IPR016112	Group II dsDNA virus coat/capsid protein
PROSITE profile	PS51032	13.63	610	682	IPR001471	AP2/ERF domain
SMART	SM00380	2.2E-7	632	683	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.1E-12	635	674	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.64E-10	635	674	IPR016177	DNA-binding domain
CDD	cd00018	7.28E-13	636	672	No hit	No description
Pfam	PF00847	1.6E-5	636	672	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0019028	Cellular Component	viral capsid
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005198	Molecular Function	structural molecule activity

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence Send to blast
MWLQVTLPAL DQTVTVGGST STYVRYVNAV GHALLKSVEI EIGGQRIDKH FDAYYEIDDE 60 LTVPAEKEGG LREMIGKYNE ADNYEGGQLH TQTGQRTYYI PLKFWFNKLP GNALPLIALQ 120 YHEIKLNVEL APAAALVRSD INVVTPTSNG APLSLIDCSL YVDYIYLDTD ERRKFASSSH 180 EFLVEQVQFT GDESIPASIS ASTQKIRLSF NHPVKELIWV VTPESSAAVN SKTGNMIFDF 240 GEVAGVDYVQ SAKLMLNGHD SSSSTALIEV KDGKESVYAI VDKEDEDRVR PFCWRYATEG 300 NKSSKYVVKS KTLEDPFTRL SHMVIGQQPK GSDVVTFVDG DHLNLTKSNL KICTPAAAHA 360 MKKKEASGTS AYLGVFEMKE GKPERRWRAT LNGEVLGYYP EEAMAAYKYD LCKRAYGDQA 420 HLNGVEEPEG FADIDAKSGI KKQQRFPIKP SGKKFFIHNM KRNGQVLAKG TYETFSEAEE 480 ACEKALAEYV RTQRENLVIS RNEMGAAVLK AKVTREQTID VLVDDDVFVE LMVNDDGKAT 540 GLSANSARGG NVYFNSTKQN LSDYVMRKKK TVEEVDEAEN SGMIIHHKNW KNEDNRAENL 600 CYAPRSTNSQ STGPQVNKKR KERDTEIVGC SKVGDKWVAQ IRDQGMKVHL GTFETAEEAG 660 RAYDEAALRI HGVQNAPRLN NSGVGET

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence Send to blast

MWLQVTLPAL DQTVTVGGST STYVRYVNAV GHALLKSVEI EIGGQRIDKH FDAYYEIDDE  60
LTVPAEKEGG LREMIGKYNE ADNYEGGQLH TQTGQRTYYI PLKFWFNKLP GNALPLIALQ  120
YHEIKLNVEL APAAALVRSD INVVTPTSNG APLSLIDCSL YVDYIYLDTD ERRKFASSSH  180
EFLVEQVQFT GDESIPASIS ASTQKIRLSF NHPVKELIWV VTPESSAAVN SKTGNMIFDF  240
GEVAGVDYVQ SAKLMLNGHD SSSSTALIEV KDGKESVYAI VDKEDEDRVR PFCWRYATEG  300
NKSSKYVVKS KTLEDPFTRL SHMVIGQQPK GSDVVTFVDG DHLNLTKSNL KICTPAAAHA  360
MKKKEASGTS AYLGVFEMKE GKPERRWRAT LNGEVLGYYP EEAMAAYKYD LCKRAYGDQA  420
HLNGVEEPEG FADIDAKSGI KKQQRFPIKP SGKKFFIHNM KRNGQVLAKG TYETFSEAEE  480
ACEKALAEYV RTQRENLVIS RNEMGAAVLK AKVTREQTID VLVDDDVFVE LMVNDDGKAT  540
GLSANSARGG NVYFNSTKQN LSDYVMRKKK TVEEVDEAEN SGMIIHHKNW KNEDNRAENL  600
CYAPRSTNSQ STGPQVNKKR KERDTEIVGC SKVGDKWVAQ IRDQGMKVHL GTFETAEEAG  660
RAYDEAALRI HGVQNAPRLN NSGVGET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ncl_j4	2e-37	34	219	92	264	Major capsid protein
6ncl_j5	2e-37	34	219	92	264	Major capsid protein
6ncl_j6	2e-37	34	219	92	264	Major capsid protein
6ncl_j7	2e-37	34	219	92	264	Major capsid protein
6ncl_j8	2e-37	34	219	92	264	Major capsid protein
6ncl_j9	2e-37	34	219	92	264	Major capsid protein
6ncl_k0	2e-37	34	219	92	264	Major capsid protein
6ncl_k1	2e-37	34	219	92	264	Major capsid protein
6ncl_k2	2e-37	34	219	92	264	Major capsid protein
6ncl_k3	2e-37	34	219	92	264	Major capsid protein
6ncl_k4	2e-37	34	219	92	264	Major capsid protein
6ncl_k5	2e-37	34	219	92	264	Major capsid protein
6ncl_k6	2e-37	34	219	92	264	Major capsid protein
6ncl_k7	2e-37	34	219	92	264	Major capsid protein
6ncl_k8	2e-37	34	219	92	264	Major capsid protein
6ncl_k9	2e-37	34	219	92	264	Major capsid protein
6ncl_l0	2e-37	34	219	92	264	Major capsid protein
6ncl_l1	2e-37	34	219	92	264	Major capsid protein
6ncl_l2	2e-37	34	219	92	264	Major capsid protein
6ncl_l3	2e-37	34	219	92	264	Major capsid protein

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1IS02	0.0	A0A1Y1IS02_KLENI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19790.1	1e-09	related to AP2 11