PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00662_0020

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

C2H2

Protein Properties

Length: 686aa MW: 72162.3 Da PI: 6.811

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00662_0020	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	248	270	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ++Fs++ L H++ H kfl00662_0020 248 FECTFCQRRFSSSQALGGHQNAH 270 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.5E-5	243	274	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.53E-6	244	275	No hit	No description
PROSITE profile	PS50157	11.552	248	275	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	250	270	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MRFGHNEQGP ETSSNAQGGE PSDGGIGGRP HEGRFRPQVL PAGGPSEDEK LRRTGGLLTG 60 QVSLGSLRRF HEVQPPRDRS RDERFQGGGQ GRSRDGGGGE RTRDGGVQEE GARNRDEGFP 120 EGGQGRNREE ELLKGGQVRG RPEGADVEMH EGGGSGGGAG GGARWGARLP PAEGHKRDRQ 180 GIPLNLEERP EEPQEDGEGD EGARSQHSGS SGADLSREST SKGGAPGREK PLQSGTNSEE 240 TSVGGRNFEC TFCQRRFSSS QALGGHQNAH KRERIQAKRH QTLASRQSAL AAQQHFPADR 300 RPRLATNPAP NPYPQPDSNF PFPAGAETLQ PQIPLPLPMP FNPFARPPWN PYQAFENLQK 360 PNPLQMPGAR PPGMPPWPFM GQPPPGYFNQ VGSAEAAAVA AASAAVALFN YNQQAGLNPQ 420 FSPPFNPEGY PSPGRMNPGA ALQTTPEMVA AYQRRGDEAR NGDDTAAPQS FGGASNMGAR 480 SMPIAPPGGP PNPLRGDPPR QPQARPPGLE APGFNPLVNV NQGAVPWFGP LGGGAGDSLG 540 PHGSRPGGVQ QQPVGPPLGT QYPGLPPGTG MPFPPQLGGA LNQPWPAALL STVGGGNQFR 600 VPGVYPNLAQ MAQLSGQQGY GPFPSGQHRG GVPRGPDLER EEGPTEQQAA APLGQSGGRG 660 EEEPADDELD LDLGLAPKQP KGKLWK

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MRFGHNEQGP ETSSNAQGGE PSDGGIGGRP HEGRFRPQVL PAGGPSEDEK LRRTGGLLTG  60
QVSLGSLRRF HEVQPPRDRS RDERFQGGGQ GRSRDGGGGE RTRDGGVQEE GARNRDEGFP  120
EGGQGRNREE ELLKGGQVRG RPEGADVEMH EGGGSGGGAG GGARWGARLP PAEGHKRDRQ  180
GIPLNLEERP EEPQEDGEGD EGARSQHSGS SGADLSREST SKGGAPGREK PLQSGTNSEE  240
TSVGGRNFEC TFCQRRFSSS QALGGHQNAH KRERIQAKRH QTLASRQSAL AAQQHFPADR  300
RPRLATNPAP NPYPQPDSNF PFPAGAETLQ PQIPLPLPMP FNPFARPPWN PYQAFENLQK  360
PNPLQMPGAR PPGMPPWPFM GQPPPGYFNQ VGSAEAAAVA AASAAVALFN YNQQAGLNPQ  420
FSPPFNPEGY PSPGRMNPGA ALQTTPEMVA AYQRRGDEAR NGDDTAAPQS FGGASNMGAR  480
SMPIAPPGGP PNPLRGDPPR QPQARPPGLE APGFNPLVNV NQGAVPWFGP LGGGAGDSLG  540
PHGSRPGGVQ QQPVGPPLGT QYPGLPPGTG MPFPPQLGGA LNQPWPAALL STVGGGNQFR  600
VPGVYPNLAQ MAQLSGQQGY GPFPSGQHRG GVPRGPDLER EEGPTEQQAA APLGQSGGRG  660
EEEPADDELD LDLGLAPKQP KGKLWK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1IPP5	0.0	A0A1Y1IPP5_KLENI; Putative C2H2 zinc finger-containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	1e-12	zinc finger protein 7