PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00652_0050

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

C2H2

Protein Properties

Length: 394aa MW: 44395 Da PI: 10.0067

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00652_0050	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.4e-06	37	61	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C C+k+F+ k +L+rH+++H kfl00652_0050 37 FVCDfaGCSKTFTGKGYLRRHLSSH 61 89*********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.05E-5	33	63	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.4E-8	35	61	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	5.1E-4	37	61	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.385	37	66	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	39	61	IPR007087	Zinc finger, C2H2
SuperFamily	SSF54060	4.36E-6	72	146	No hit	No description
SuperFamily	SSF54060	4.59E-14	251	339	No hit	No description
Pfam	PF13392	5.5E-9	292	334	IPR003615	HNH nuclease

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MTALVSHVFA HPSVQAIDVS QLEGWQDSKK NDGPEQFVCD FAGCSKTFTG KGYLRRHLSS 60 HSEQNAPPAS YEGWRQHHEY VHIYGLPDGR VWSCEAGRFL KGTKLNGYIV LRIDGKRIQR 120 HRLNFEIAYG RAILPGMDVD HIELSRLEHN RKTLKDNPGA GKKRSVTRGF PVIARHVASG 180 REVRYVSVSA AASTLGLVRE PVSRRIQRGS SVEYGGHVFR RCPEHVAEQE DMPGEEWKDA 240 KLHGRLLRGT KVSNLGRVQL CDGRRTEGRI EHGRHRVGLQ VDGHRKDVFV YVLIAHTFIG 300 PPPSDKHTVD HIDGNCCHNV IGNLHWATVE EQTRNTKRNR AVRKHNLQGT LLQTYGTVAE 360 AAEKNDVSYG RVHYAATTGS TDTGFRWEFV KRVT

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MTALVSHVFA HPSVQAIDVS QLEGWQDSKK NDGPEQFVCD FAGCSKTFTG KGYLRRHLSS  60
HSEQNAPPAS YEGWRQHHEY VHIYGLPDGR VWSCEAGRFL KGTKLNGYIV LRIDGKRIQR  120
HRLNFEIAYG RAILPGMDVD HIELSRLEHN RKTLKDNPGA GKKRSVTRGF PVIARHVASG  180
REVRYVSVSA AASTLGLVRE PVSRRIQRGS SVEYGGHVFR RCPEHVAEQE DMPGEEWKDA  240
KLHGRLLRGT KVSNLGRVQL CDGRRTEGRI EHGRHRVGLQ VDGHRKDVFV YVLIAHTFIG  300
PPPSDKHTVD HIDGNCCHNV IGNLHWATVE EQTRNTKRNR AVRKHNLQGT LLQTYGTVAE  360
AAEKNDVSYG RVHYAATTGS TDTGFRWEFV KRVT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1IM54	0.0	A0A1Y1IM54_KLENI; Putative endonucleases