PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00637_0100
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family Whirly
Protein Properties Length: 275aa    MW: 30204.4 Da    PI: 9.6302
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00637_0100genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly120.51e-371012362138
         Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlas.kesceffhdpaak.gsneGkvrkalk 95 
                    +yk+kaa+ v +++ptf++   gnl ++r+G++lle+a+ ++ r ydW+kkq+fals+ e + l+dl +  ++ +ffhdp+++ +++eGkvrk l 
  kfl00637_0100 101 IYKGKAAMGVVPMKPTFVNK-NGNLSVDRDGAILLEFAPIVSARSYDWSKKQTFALSVLECGALLDLHPgMKPLDFFHDPFKGqQGQEGKVRKKLV 195
                    9*****************99.99*******************************************7652789********6526899******** PP

         Whirly  96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsll 138
                    v+   +   +fv l+vt   + +  ++++Pvs ae+avl++l+
  kfl00637_0100 196 VQTSQNNDSYFVALNVTGASQPV--NLTLPVSFAEMAVLKTLI 236
                    *****************995555..5899***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.105.8E-5488254IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544475.89E-3893257IPR009044ssDNA-binding transcriptional regulator
PfamPF085363.0E-40101234IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MMQTLANLAQ TRPALQLAAT SLRQKQNFVL PTKSFLHGAP TFPSVRFFDS LDSLIAGRHN  60
GHQNQATRCM HQSAPQYADS FPAQSNSQSP SQKRVFLSHT IYKGKAAMGV VPMKPTFVNK  120
NGNLSVDRDG AILLEFAPIV SARSYDWSKK QTFALSVLEC GALLDLHPGM KPLDFFHDPF  180
KGQQGQEGKV RKKLVVQTSQ NNDSYFVALN VTGASQPVNL TLPVSFAEMA VLKTLIQYSL  240
PTLMGWDVWA NPELAAQANV VDEGTQLGGA QEWNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koo_A2e-37942568171Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_B2e-37942568171Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_C2e-37942568171Single-stranded DNA-binding protein WHY1, chloroplastic
4koo_D2e-37942568171Single-stranded DNA-binding protein WHY1, chloroplastic
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0573980.0LC057398.1 Klebsormidium flaccidum gene for hypothetical protein, complete cds, strain: KfWhirly.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0M4TRZ30.0A0A0M4TRZ3_KLEFL; Uncharacterized protein
TrEMBLA0A1Y1IHR60.0A0A1Y1IHR6_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP23161635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.16e-43ssDNA-binding transcriptional regulator