PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00560_0030
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family MIKC_MADS
Protein Properties Length: 349aa    MW: 38009.7 Da    PI: 9.4183
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00560_0030genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-30958150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   kri+n +nrqvtfskRrng+lKKA+ELSvLCda+vavi+fs+tgkl+ey+
  kfl00560_0030  9 KRIDNATNRQVTFSKRRNGLLKKAYELSVLCDADVAVIMFSPTGKLFEYA 58
                   79***********************************************8 PP
2K-box55.91.8e-1980161990
          K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                     +  ++ +  q++++ + e e+ +re+Rh++GedL++L++ +L qLe++L+++l+k+R++++ell++++ +l+++ ++ + +
  kfl00560_0030  80 RKFDNNDYVAQQAKRFRHEAETYKRELRHYQGEDLGPLQVPDLDQLEKKLDDGLQKVRARQKELLTQEVMKLRQQLEQSEAQ 161
                    455678899***************************************************************9998877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.352161IPR002100Transcription factor, MADS-box
CDDcd002651.77E-47277No hitNo description
SuperFamilySSF554555.36E-36291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1484160IPR002487Transcription factor, K-box
PROSITE profilePS5129710.36885174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGRAKIEIKR IDNATNRQVT FSKRRNGLLK KAYELSVLCD ADVAVIMFSP TGKLFEYANS  60
SMKEILDRYH NAPQEQREKR KFDNNDYVAQ QAKRFRHEAE TYKRELRHYQ GEDLGPLQVP  120
DLDQLEKKLD DGLQKVRARQ KELLTQEVMK LRQQLEQSEA QAVASAQQSN PYASHFSELL  180
GRSSLATPPG PSLSNLPALP YFPSLTAGFG PSSSSLGAMG QPSPSGQQGV LSPSQLMDLG  240
MPGPQKLPMR IGGLARPQND PPGTPGGVGL GGGLGGLEQQ WGQGPSSLEM LLLERQQQQD  300
QQEQQQQQQQ QRRYGGLVLP SLPHPSGGQG PGTGPSTPGG QGLPPGQGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-24194191MEF2C
5f28_B1e-24194191MEF2C
5f28_C1e-24194191MEF2C
5f28_D1e-24194191MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1IME70.0A0A1Y1IME7_KLENI; K-box region and MADS-box transcription factor family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.47e-44MIKC_MADS family protein