PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00520_0060
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family GATA
Protein Properties Length: 474aa    MW: 50626 Da    PI: 6.2781
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00520_0060genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.3e-16842135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C++Cg t TplWRrgp  ++ LCnaCG ++r++g+
  kfl00520_0060  8 CTHCGITATPLWRRGPPEKPILCNACGSRWRHRGT 42
                   ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-9254IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-11444No hitNo description
CDDcd002021.01E-15742No hitNo description
Gene3DG3DSA:3.30.50.101.1E-12842IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440833IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.255841IPR000679Zinc finger, GATA-type
PfamPF003201.7E-13842IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGAKSGPCTH CGITATPLWR RGPPEKPILC NACGSRWRHR GTLAGYMPMQ VTGLSTCHVP  60
TGFVASDEPV IPRVKSAGSL KRKERSERVG QDSERGLSDR LRERREKDGY ETDGSEASLS  120
GQAARRKMSP SWRQGFLSLT QTALLFPQLG PPSSPPPCAP PLPGANHAWS QATALLSDLH  180
AFDLDLSDVL TSEEPFAGLD DDVTLFDARQ GDPPAAEQPL KSLDPGQYIC GLVVRTRVEA  240
LAGPGARTNL APTNHVAEPH ALSSKVDAQA QNSMPLFPSS ARFTLPCRHA PPVPSAQVAW  300
PPAAPGLAQL NIAKLQGSDF GNGSPHRASF PDNLLFKGAA GPESLNDFMA RTEGDKRFGE  360
LAGAHGMPGS HDSLDSGASL VLDETREHPM VDLNPPPEQQ LPLSGGEYKA LLSPPAPEVP  420
LWGAEKGGEK DLRELHRMFS APIWDSLDMD PHGAEKEFGL GRFSVPPAEA GRPI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1IES30.0A0A1Y1IES3_KLENI; GATA zinc finger-containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27491530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.33e-21GATA transcription factor 26