PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00480_0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | MYB | ||||||||
Protein Properties | Length: 1329aa MW: 146037 Da PI: 11.1199 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.9 | 5.4e-14 | 272 | 316 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+WT +Ede+l+++v+++ g++W ++a+++g+gRt+ c ++q kfl00480_0040 272 RGPWTLDEDEQLKELVTKHEGHDWVSVAAELGTGRTAAACLMHYQ 316 89*****************************************99 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3e-13 | 333 | 379 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ WT+eE ++l av+ +G+ +W +a+ +g +Rt+ qc++rw ++l kfl00480_0040 333 KQLWTEEENLRLRYAVAAFGTTSWVHVAEVVG-TRTDPQCRERWVNVL 379 577*****************************.***********9975 PP | |||||||
3 | Myb_DNA-binding | 33.9 | 7.3e-11 | 387 | 432 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrw 44 +WT+eEd +l +v+qlG g W+ a +++ ++Rt+ ++ ++ kfl00480_0040 387 PWTAEEDARLEALVRQLGAGKWAQLADEFNagrpLKRTDDRLRKHY 432 8********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-5 | 146 | 162 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.3E-5 | 237 | 271 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-12 | 250 | 320 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.832 | 267 | 323 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-9 | 271 | 321 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-11 | 272 | 316 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-12 | 272 | 320 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.25E-7 | 274 | 317 | No hit | No description |
PROSITE profile | PS51294 | 19.406 | 328 | 383 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-14 | 331 | 378 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-13 | 332 | 381 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-10 | 336 | 379 | No hit | No description |
Pfam | PF13921 | 2.6E-12 | 336 | 396 | No hit | No description |
SuperFamily | SSF46689 | 1.57E-17 | 359 | 437 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-12 | 379 | 440 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-8 | 384 | 438 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.52 | 386 | 440 | IPR017930 | Myb domain |
CDD | cd00167 | 1.00E-6 | 387 | 436 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1329 aa Download sequence Send to blast |
MEQTTADPPP EGGASHTEAP GILPFASADN PELIMEALQR NRACQKSMTA VLEAIQERIR 60 ANAMLQKKVR AVVKASKEVG AKPKEADMGV RTAGLDWPGR KKPKSRRTGC SRIFVALDGT 120 GPEENPDIAR TQPVRAVLAA CAREQRWSEA DKERLRGAVR LQVQEKWVTE LMAALQSWQV 180 GAIRPQVQGK WETDLTAALQ REGREQGTGV SLSALHSGMA QMRQRPVTDD DITAALPTLD 240 WENVMTKAKL VGKTAEDCQA CWTADCAPGI NRGPWTLDED EQLKELVTKH EGHDWVSVAA 300 ELGTGRTAAA CLMHYQRDLR EERPEPRLGP VRKQLWTEEE NLRLRYAVAA FGTTSWVHVA 360 EVVGTRTDPQ CRERWVNVLD PSVDQSPWTA EEDARLEALV RQLGAGKWAQ LADEFNAGRP 420 LKRTDDRLRK HYEALVTNKM IEPITTVPSP AAPPELQLTV ADSNASRLIR RREAAQAREA 480 KRKTAIVPRE KITEISHSKR GRKPKQAKET AGIRKTGKSR LPPPLALSKA VPPPLEPGLS 540 NVLRLVHAKK VQPTHVGRTG KPAAVVDGKS VHFMQRHVQP VIPVARPVTA SQPPPVIAQA 600 NGHLGVGQIR GDQRTGARAK GAPRGPVAVR VSKPKLTLEE RLAQRREKDR RRRAADRAER 660 EAAEERNGTA AERVAARLGK EQERQEKRQR KEEERKRKEE ARKRAREETR RRLQQERDEA 720 QKKREAMKET LRREREEARA KRMREKEAEK EAKQRKKAEE DAATGAEGTG RKAAAHGGRE 780 ETQVGRAKVQ RPVSKKVRKD EGVGTATGKG AQKKGGRGAR VGVRVGPAKK GAVQADGKAQ 840 RGATRGKKDA KKKAAVGRGA RKGGDQRAEK RADGEAAEQA RGSRAQGASP GGRSSQRLRA 900 VGRPVTERSG NSGADDLERN ATEGKRKKAG RKRAAEPEGS QGRPAKRGKV EEGTGTEEGT 960 EVVRVTRSRQ ELVTSTRKRR REEGDEQQRG GTREGAEKGP GERRGKKGRV EGAKGNNETI 1020 VQAGEKKDGR KVKGKLDKNK EPGRMTRSTH MQDAARVTRS GERGTRRSER ERGEGKKRDG 1080 GVGEVGPGKR DENGKKSVSP TRSLRRVSRD GGSAGEETGV DVREEKESKP RQRTSRLGSA 1140 DIDEVSGTEG SECSEESEID GRVCAPARSP EKRTRAKKTA ADAEPGNDVT SPDGKLPGGR 1200 ETRGRKGRAE AAVWGVPKVR EREGELEAAG KRVPEQERSL RAGDKREGGG VPSGKKKRKR 1260 PPTQEGRAAT LPSKDPRTGT RGAEKVRGKQ APPREAKSDQ LVQDRSSTRK TRLTDTEPRR 1320 SLRNSKRNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 8e-17 | 275 | 434 | 1 | 153 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-17 | 275 | 434 | 1 | 153 | MYB PROTO-ONCOGENE PROTEIN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 643 | 650 | QRREKDRR |
2 | 976 | 980 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1IHP1 | 0.0 | A0A1Y1IHP1_KLENI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP7355 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 3e-36 | myb domain protein 4r1 |