PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00457_0110

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

C3H

Protein Properties

Length: 1124aa MW: 117231 Da PI: 7.9724

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00457_0110	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.9	2.2e-10	8	32	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 t+ Cr++a +GtC +Gd+C+F+H+ kfl00457_0110 8 STVTCRYWATSGTCFFGDQCNFSHS 32 6899********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.75E-7	5	36	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.286	6	34	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.7E-7	6	33	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-7	8	32	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.1E-8	9	36	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.498	46	75	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.4	48	74	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50011	8.924	713	1021	IPR000719	Protein kinase domain
Gene3D	G3DSA:3.30.200.20	1.2E-5	727	852	No hit	No description
SuperFamily	SSF56112	1.61E-12	727	942	IPR011009	Protein kinase-like domain
CDD	cd00180	9.64E-11	729	878	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1124 aa Download sequence Send to blast
MSSPTDPSTV TCRYWATSGT CFFGDQCNFS HSLEERGNVA KSGAVPKKEK ACRNLLLTGY 60 CKDENGGCEY NHDIVGITRM DPPGSAQLNS AKPLATSSAP TAPGNAPAAA PTLASPKKPG 120 TPGASSLVQT LQARSILPVS APAFVPAAVA AAQRAALNAW GGITPGKGGG GDGTSPGGGA 180 NGTATGEGGN GAEARALEVL KVDGVEQAKV SKSGDSSGVS VGLALSSSVG FGSQGLQAVS 240 TGVHTSSSSA PGTPTGGNTP SGTPQPSPVK PRTAESGVSL AMSAAPSMKS LPANINAAPF 300 IPKSASLNPS SGATGAATSV ATSRVANANA APFVPNNLTG APKFYQRSNS TPGVGYGALP 360 GQGPFNPGVN TARGDSTMSP RMGGGAPVHG QGGGMGAMNS PRGVGGPAGM GPFDVQRRQM 420 SQFHQQALHQ QQHAAAAVRG RGVSLPQYAQ QGLDNSHRPY SGPASFGLPE GDDPALGMSS 480 MSPPHPRGGP RFGNNQFLEG GQPNHRLQDA MSALKMGDGG GRFGGNPSLN RSLSAMGMMS 540 PRDEYRSRTP PMPGMMTSAP ASPMKQQMGR ATPPLTSQGL GRPRPGGPMQ PFGQRSNSPS 600 LGGPVPTAAT QVGGATYFFG PGQGAGPSQM GLGGHVSMGP AGGFGLGPGR PDHNRNRTVI 660 RPGTVQMASK FLPESLREEI QQRAALVQAQ IDPEQDISDL PEFVGRFHTL YPLESSEADG 720 MSSLGVRTTV FKGISSTDGL AYAIRRIDHR QVIPTAELAT AANETIERWS HLAGHPHVGV 780 MREAFVSKEI EDSPALYFAY DYYPGAVSLE NAHLQQEQSG GVVHLTVTED ELWSYTIQLA 840 TALRAIHGAG LIARGGALDA SKVLITSRGR IRLCSVGFLD VLHGDPGEDK QFLQRIDLAE 900 MGRLLLSLAC GSAMNASLDF MAAHYSPELV RITQALIASS PDNHEVGGLA SIKQLTNVLG 960 DRMFSSLEHC HVYADHLMDE LEKESENGRL LRIIIKCSMI NERPDDDVAE SNWSETGDRY 1020 LLKLFRDFVF HQTTEEGKPA MDWGHIIEAL NKLDAGVSEK VTLLSRDEQS LLVASYKDLK 1080 RCLEGTYSEL QAKASNVKRR PSYQPNPLLL GSQPMGATQG MGLR

Sequence ? help Back to Top

Protein Sequence Length: 1124 aa Download sequence Send to blast

MSSPTDPSTV TCRYWATSGT CFFGDQCNFS HSLEERGNVA KSGAVPKKEK ACRNLLLTGY  60
CKDENGGCEY NHDIVGITRM DPPGSAQLNS AKPLATSSAP TAPGNAPAAA PTLASPKKPG  120
TPGASSLVQT LQARSILPVS APAFVPAAVA AAQRAALNAW GGITPGKGGG GDGTSPGGGA  180
NGTATGEGGN GAEARALEVL KVDGVEQAKV SKSGDSSGVS VGLALSSSVG FGSQGLQAVS  240
TGVHTSSSSA PGTPTGGNTP SGTPQPSPVK PRTAESGVSL AMSAAPSMKS LPANINAAPF  300
IPKSASLNPS SGATGAATSV ATSRVANANA APFVPNNLTG APKFYQRSNS TPGVGYGALP  360
GQGPFNPGVN TARGDSTMSP RMGGGAPVHG QGGGMGAMNS PRGVGGPAGM GPFDVQRRQM  420
SQFHQQALHQ QQHAAAAVRG RGVSLPQYAQ QGLDNSHRPY SGPASFGLPE GDDPALGMSS  480
MSPPHPRGGP RFGNNQFLEG GQPNHRLQDA MSALKMGDGG GRFGGNPSLN RSLSAMGMMS  540
PRDEYRSRTP PMPGMMTSAP ASPMKQQMGR ATPPLTSQGL GRPRPGGPMQ PFGQRSNSPS  600
LGGPVPTAAT QVGGATYFFG PGQGAGPSQM GLGGHVSMGP AGGFGLGPGR PDHNRNRTVI  660
RPGTVQMASK FLPESLREEI QQRAALVQAQ IDPEQDISDL PEFVGRFHTL YPLESSEADG  720
MSSLGVRTTV FKGISSTDGL AYAIRRIDHR QVIPTAELAT AANETIERWS HLAGHPHVGV  780
MREAFVSKEI EDSPALYFAY DYYPGAVSLE NAHLQQEQSG GVVHLTVTED ELWSYTIQLA  840
TALRAIHGAG LIARGGALDA SKVLITSRGR IRLCSVGFLD VLHGDPGEDK QFLQRIDLAE  900
MGRLLLSLAC GSAMNASLDF MAAHYSPELV RITQALIASS PDNHEVGGLA SIKQLTNVLG  960
DRMFSSLEHC HVYADHLMDE LEKESENGRL LRIIIKCSMI NERPDDDVAE SNWSETGDRY  1020
LLKLFRDFVF HQTTEEGKPA MDWGHIIEAL NKLDAGVSEK VTLLSRDEQS LLVASYKDLK  1080
RCLEGTYSEL QAKASNVKRR PSYQPNPLLL GSQPMGATQG MGLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4bwp_A	2e-72	672	1096	7	448	PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3
4bwp_B	2e-72	672	1096	7	448	PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1IH13	0.0	A0A1Y1IH13_KLENI; Putative CCCH zinc finger-containing protein kinase
STRING	PP1S242_6V6.1	0.0	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP13361	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	8e-06	C3H family protein