PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00451_0030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | DBB | ||||||||
Protein Properties | Length: 226aa MW: 24199.2 Da PI: 6.4966 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20 | 1.4e-06 | 4 | 34 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ +e ++ lfC ++ lC+ C ++ H g kfl00451_0030 4 LCDVCEAAPALLFCAADEAALCRPCDEKVH-G 34 6***************************99.5 PP | |||||||
2 | zf-B_box | 29 | 2.2e-09 | 54 | 93 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Ht 38 + C+ +e+ ++ ++Ce +++ lC +C + H++ H+ kfl00451_0030 54 PSCDVCEKAPAYFYCEIDGTSLCLQCDMDVHSSagkklHE 93 78*****************************777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.253 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.3E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.48E-7 | 4 | 45 | No hit | No description |
PROSITE profile | PS50119 | 9.015 | 51 | 97 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-10 | 51 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.24E-8 | 54 | 97 | No hit | No description |
Pfam | PF00643 | 6.1E-7 | 54 | 93 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MRALCDVCEA APALLFCAAD EAALCRPCDE KVHGCNKLAS RHVRLELAEA RAVPSCDVCE 60 KAPAYFYCEI DGTSLCLQCD MDVHSSAGKK LHERFLLMGQ RVEIPMAPGK PEGGDKVPVL 120 QEQRLHQNGN AHPSHRHGKP DEEMREARVA DSSGTAMATA IGGEPSGDAD TSKQSLLDLN 180 RCPPPRSKGE HSKQAAVSSG GHRNGPAAQA GQSRPPMNDQ DRNEVG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024517934.1 | 3e-62 | B-box zinc finger protein 18 isoform X3 | ||||
Refseq | XP_024540627.1 | 3e-62 | B-box zinc finger protein 18 isoform X3 | ||||
Swissprot | C0SVM5 | 4e-55 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A1Y1IIZ4 | 1e-164 | A0A1Y1IIZ4_KLENI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3352 | 16 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 2e-57 | DBB family protein |