PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00368_0180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C2H2 | ||||||||
Protein Properties | Length: 1891aa MW: 203601 Da PI: 8.8252 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 718 | 740 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cgk F + L H++tH kfl00368_0180 718 FRCRTCGKGFETLQALGGHQKTH 740 89********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.12E-6 | 73 | 129 | IPR009057 | Homeodomain-like |
SuperFamily | SSF54171 | 7.85E-7 | 360 | 420 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 10.744 | 360 | 419 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.9E-8 | 360 | 419 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0019 | 360 | 425 | IPR001471 | AP2/ERF domain |
Pfam | PF13912 | 9.0E-4 | 686 | 709 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.12 | 687 | 709 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.27E-8 | 687 | 740 | No hit | No description |
SMART | SM00355 | 0.14 | 687 | 709 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 689 | 709 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 7.1E-8 | 717 | 741 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.344 | 718 | 745 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.042 | 718 | 740 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 720 | 740 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 772 | 799 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.4 | 772 | 794 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 774 | 794 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.099 | 890 | 912 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.061 | 890 | 912 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 892 | 912 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.99E-6 | 1064 | 1087 | No hit | No description |
Pfam | PF13912 | 6.8E-6 | 1064 | 1090 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.635 | 1065 | 1092 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.072 | 1065 | 1087 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1067 | 1087 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.99E-6 | 1151 | 1178 | No hit | No description |
Pfam | PF13912 | 1.8E-5 | 1155 | 1179 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.5 | 1156 | 1178 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.928 | 1156 | 1183 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1158 | 1178 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.577 | 1570 | 1597 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.9 | 1570 | 1592 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.1E-4 | 1570 | 1594 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 1572 | 1592 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1891 aa Download sequence Send to blast |
MAGDDAAASE PPRVRRGSNF QVDISQLPIA RPKPARSTVW KPALHEDDPY WQRRDRFSKT 60 LPITEGPAHA LWPDYSIGST TWSIEEEKDF VLGIFLFEKN FKPISRFIGD GQQKNFIQCR 120 WYYYNKFKRA LHPLYHAFKL SSLQHSKEQH VRGSLMVLGN RGRKLLARLF HHVTDAKVQD 180 RIMDAHSKMA RNEMSLEKFV RLLRKHSSAA TLWAAFSIGQ EDDLSSCHYH LFAEKSSRRS 240 RLVANSRYRD CSTLEIQEEL AQMDIRATPT SQMSDLFHMG VWPRLERLGW HLETVHKGNG 300 RNMVYYCCPA LARFTKGAQR GVEYFDASRA LLSFVAHNLS VLDEKPETPT AYPSSNLDPQ 360 YQGVEKRGDR WRSYLMFEPE DGQSELVELG DFTTAERAAA AHDIAALKYI GHLAPRNFTH 420 DFEQDEGLAR MSATEAAAWL AEQAQLLPSP PAPPATSLRS PHPFSPPITP RPGALSGGFS 480 PCLSDPMKSP RMQRPAPLSL SQLLRVAAEA AGQGEASKGG PDEQAREGPQ EAWSPAALQL 540 SLGQRRAAQQ GGRGAYVEDG WTEQHAAASL VAAAVRPETT STQLSHQMAA IKLHSSDSIA 600 DGQAGNGIIR SSDIKVEGAL PAEVALCAEG THEGDPRHWW MQQFLEARAS MERRREGSPD 660 EDEWERGRRV SRKGSEGPEG PAGAGRHVCP DCGLSFESAQ QLGGHRVVHK RPAGSERFRC 720 RTCGKGFETL QALGGHQKTH QPAQRARLPR DDQETEAKGD GHSSRAPGPG WLQCPTCLDW 780 FKNGHALGGH QRVHGGQQFP PMKGIRSGPR PPPEINVFLV AREEKPVACA LEGDAGDDLD 840 DEEVLGEIIY RQPGDDSGDD DDMDDGEAGA GDAYGRRRAG RPRMKKAGKY QCRKCDATFP 900 TSRGRDGHQR MHGPSAGAVV RRGPSAEPYH DGAPYGPMAA GWGSDDADPT REAAPEPPPA 960 QYAQVNLATG EARADDRAAE EGGEGQPATV GPGAEEVGAG DMLPFTAARS RRMRKPRRFE 1020 SFEWQTDEWR REEKMDETAP PVGADGSGSD GDMESSGSER DAHVFACNEC TAVFPSARSL 1080 GSHRKLHRSE RRRRLEELRA MSEDGHYGSE VGPKAEPHAA GAPAERREAA EPHAKARALE 1140 VGREVYGGCI LANGRYRCNT CFKDFGTGQA LGGHQRIHSS GPTPAKKKAP KALAKPRKRA 1200 PTGTHPKEPH RAAFGRPLSA SGSRCVVPGR PAWMDDDDDE EAEEEVRMGG GGEGGWRNAA 1260 EESPVGTGRD VAQRWEATAG GGGAECEDSA ELLMAIHFQQ QERERERERG VAQRGITKPL 1320 AASPLGVKAR LGAAATAGSE PPQDVEMTVA SPTEKVAPAA AQPVAIGIGG PRPRAVAVGG 1380 AWHAAARLSA EWAENVPIGQ SSVFFPGRAQ TDTWPGGEKR KRVLSQLPGA SSPESSPANS 1440 PQATGPTPSR FHARPTAAHV PAPYRPASMG SPAGAGLSRY GAQALHGQPR GAPETGGRPD 1500 PRFLSTLTSS TSAAVTKVSY GMPPSDARQD ESTGPAKCFH AAMAQGRSLP ECLTRSPGVC 1560 LFQVGPARLH QCGECGAEFE TGAALGGHVG KHRRENEKLR EKEAHASDPP SREALRAGIM 1620 ARVGMSLTPR GGNVKAATAR HQAPKKRIMV KFQAQQQQHG PPHPAAPLAA HPAAPSSAYL 1680 RMPIAGLSQH PGGAVRLGPY SVPPSQLATG RAPLRLTVQV ATSPVVSPAR LVRSPTFGRD 1740 ALPRAAAATA SPDPTPRTRD VAALLQNWKA HTDTGGRGEP LQAARTCESP SRTPVRMVSR 1800 LAVPPALLTL PNGKADPEAA APKVLSPGNV NTAARAPMGP LQWEAKLAQR KAASPTGGCK 1860 GSSMPAGEGQ ARTPKARPTG ERAVNAPRSA T |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1083 | 1093 | RKLHRSERRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 9e-12 | C2H2-like zinc finger protein |