PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | kfl00334_0120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 626aa MW: 66426.8 Da PI: 9.9659 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 42.4 | 9.8e-14 | 101 | 135 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C k+p WR gpdg+ktLCn CG+y++ +++ kfl00334_0120 101 CAVCSLQKSPRWRTGPDGPKTLCNRCGVYWATMRH 135 999****************************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 10.33 | 95 | 129 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.1E-9 | 95 | 148 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.57E-10 | 96 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.8E-11 | 98 | 133 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.66E-7 | 100 | 136 | No hit | No description |
Pfam | PF00320 | 1.4E-11 | 101 | 135 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.40.10 | 5.0E-11 | 571 | 623 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.3E-9 | 571 | 619 | No hit | No description |
Pfam | PF13920 | 8.1E-13 | 575 | 620 | No hit | No description |
PROSITE profile | PS50089 | 10.483 | 576 | 614 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 7.1E-6 | 576 | 614 | IPR001841 | Zinc finger, RING-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 626 aa Download sequence Send to blast |
MRQNTRLAIL AAELERQSPP ETSQPPPQNE GESSDGGVVQ TIPAVSLRGG APTRWKELGI 60 ETPDPRTPNP RTPIMSRSGP DSVQATPSTV PRSAPEGKRE CAVCSLQKSP RWRTGPDGPK 120 TLCNRCGVYW ATMRHKWDNL VARFKGDPSG KMRGTPSTDG GEDEGGTGTS VGKGRKPGKV 180 KPDPTPTPKN TRKRTTRTVP NPTPLAHGNG GPPFLDSATA NGLIAGGVAT RSGEHAPAAA 240 RQLELATEEK SKPPKKRWIE ELTETSPKRR SGQPVRWRAL SDEGDVAAND SPSGKRRRGG 300 GSDVGEEGGL RKEEASDAQK EEVTGVAKEV TGVGDEEAPA VRKEEALERD VRKEGRMQRG 360 LARVLEAANG GFDAGEPSPK AAPPKRRRTE LEGLLGAAKK EEAPGERRGG DGRLQRGLAR 420 VLEVERLANG DGEQDASLSL ESGEVAVRRR QGRRANGSDD VSGGLLLEED GDAGLARNRR 480 GKPPLGKGGG GKWELRPRPD SGHRSKGGES ESDSDAEGEK PGVKRKGGKG SLDGGVDNRP 540 NGKRGHSEDL NDAPRRVGNG ENGVNGRPRR DGSALCMVCG ESPREALFSP CGHFNFCYGC 600 ASQNLKEKGD CPKCGVKVTG VQKVVL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 383 | 389 | PKRRRTE |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1IGB3 | 0.0 | A0A1Y1IGB3_KLENI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60530.1 | 2e-09 | GATA transcription factor 4 |