PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00334_0090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | E2F/DP | ||||||||
Protein Properties | Length: 1081aa MW: 112733 Da PI: 9.4623 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.5 | 4.6e-23 | 227 | 292 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL+ll+ +f++++ +++ + v l+++a++L v +rRRiYDi+NVLe+++++ +k+kn+++w+g kfl00334_0090 227 RKEKSLGLLCDNFMSMYTSAQYEFVILDDAARKL---GV--ERRRIYDIVNVLESMQVVVRKAKNRYTWHG 292 79********************************...**..****************************98 PP | |||||||
2 | E2F_TDP | 69.5 | 4.1e-22 | 394 | 473 | 1 | 70 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 r+eksL++ltq+f+ l+ +s++g+++l+++a+ L+s+ ++k+k+RR+YDi+N+L +++liek +k+++rw+ kfl00334_0090 394 RREKSLGVLTQRFVGLFLTSHTGVLSLDHAAEVLLSDcdataKTKTKVRRLYDIANILASMRLIEKiqvnkVRKPAFRWI 473 689***************************************************************99999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.9E-25 | 225 | 294 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.3E-26 | 227 | 292 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.6E-19 | 228 | 292 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.02E-13 | 229 | 293 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.5E-21 | 391 | 474 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.0E-29 | 394 | 474 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.0E-18 | 396 | 473 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.54E-10 | 396 | 473 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1081 aa Download sequence Send to blast |
MGSHAERSSQ DDFPLAFKCG RRRTSFPPPS QLDLPTLVTP KAATVAGAPA PKADATTTGS 60 QPGCDTWQSV EAPEPSIGNS LPVDEGSSQE HVESTQLEER PERTSLAAKR KTFSGGPAAD 120 CMSGPLEDQG HLEPFPPNGV KRLRVGHALQ LLDTNLPTLR PGSALSKANP SELPAASASE 180 GPAEVSADVS GRRGKGRKGG VPKVPVKEED GGESDSIAEE GGLAYCRKEK SLGLLCDNFM 240 SMYTSAQYEF VILDDAARKL GVERRRIYDI VNVLESMQVV VRKAKNRYTW HGLDNLPCAL 300 AQMKEDALRK EGGLAQASAI ASALSRERSM DLCEDILPAS QTDSFHGFPV SQPDSVPGSL 360 ASSRNTTPCN SDDEEADVRG PRGGKAKKSA GDSRREKSLG VLTQRFVGLF LTSHTGVLSL 420 DHAAEVLLSD CDATAKTKTK VRRLYDIANI LASMRLIEKI QVNKVRKPAF RWICANSRIA 480 LNSRADNLKW CVPLLRPEEL AAGGSKRPAD DPPSVEPAEN ELPAKRLRTG LQRVNEEGVG 540 APGAFEWVRS LTGSGRGIAP GQMPDRPVAV YPSTQWPIAI AHVAGGKHPG EGPQVPFGGS 600 ENGWREWGGE RIGAGYGGVL GPPGPVGSGE QGARKAGQAL LRQVSAPVAV KIETDRPMTG 660 PVLKASGSWP VLGGFPSTEF FGLPLTGGPL ARSATPPLQT TSPEAPINTG PVEGLRSSHE 720 ESLQRSPVTK CAMTGANPPQ IHSLTDPETG ARSPSPSPSP TEGSPPTTLR CEKAPARKLR 780 HILPRTPATS AHAAATSSPG LAIPSADTWL TPNAKPLPDT PLFAGLFGGQ CENPSGVNAV 840 NPAYVQYMAA CHALYQQFAA PVHTLPAAAP VHTAAPVHTQ APNYAAVPNY ASVPVHTPSS 900 YATSPLGAAR SGGVNSFPAP VVSPNRAAAA TNQFGMHSLQ GPVLPGVAVP SPMNARLLTP 960 PAQKQGPGRA IPALQARGPM PPGLVLLPGT ARPAKTSPNQ GPVGVPRAEQ AFPFGASLEH 1020 NTGALGPGNF GPPGQKRVAV VQQGPANGPS VGRRLTAGIT ALGGTRPGSA KRGGSPPGGK 1080 R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 4e-39 | 227 | 468 | 4 | 232 | Transcription factor E2F8 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1I846 | 0.0 | A0A1Y1I846_KLENI; E2F family transcription factor protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2474 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 7e-56 | DP-E2F-like 1 |