PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00298_0100
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family LSD
Protein Properties Length: 269aa    MW: 27922.1 Da    PI: 8.4219
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00298_0100genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.84.2e-1493117125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    C+gCrtlL YP GA++VRC+lC++V
  kfl00298_0100  93 CSGCRTLLVYPQGASNVRCSLCQFV 117
                    ***********************98 PP
2zf-LSD141.91.7e-13132156125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    C gCrt+L+Y rGA+sV+C+lC+tV
  kfl00298_0100 132 CVGCRTPLMYVRGASSVQCSLCHTV 156
                    ************************9 PP
3zf-LSD133.66.4e-11170194125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    C gC+ +L+Y +GA sV+Ca+C+ V
  kfl00298_0100 170 CAGCGQTLMYSAGAQSVKCAVCQYV 194
                    **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.107.8E-489173No hitNo description
TIGRFAMsTIGR010537.3E-1590120IPR005735Zinc finger, LSD1-type
PfamPF069438.3E-1393117IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.4E-16129158IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-11132156IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.5E-9168195IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-9170194IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MLSAASSSSA GYQRVASSDA LVTPGSAPPA SATSPGSRPA SAPPPIAPRP NPMPAPLQPL  60
APYPAPHMQH MMPGPPGPSG HYGPPGGQGQ ILCSGCRTLL VYPQGASNVR CSLCQFVTSV  120
MPQGSEMAQL VCVGCRTPLM YVRGASSVQC SLCHTVNLAM EANRIGYVNC AGCGQTLMYS  180
AGAQSVKCAV CQYVTQASVG MNRMPLPSPR PPYLTPQPLH QPPPQQIPLQ QQVPPRTQTV  240
IVENPDTLDE SGQVVSNVAV GVTSTDKKV
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002963886.17e-69protein LOL1
SwissprotQ6ASS25e-47LOL3_ORYSJ; Protein LOL3
TrEMBLA0A1Y1ICY20.0A0A1Y1ICY2_KLENI; LSD1 zinc finger family protein
STRINGEFJ357573e-68(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-44lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]