PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00250_0060
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C2H2
Protein Properties Length: 394aa    MW: 44135.1 Da    PI: 5.9765
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00250_0060genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-056387123
                   EEETTTTEEESSHHHHHHHHHH..T CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                   y+C+ Cgk +s+   +k+H+ t  H
  kfl00250_0060 63 YTCTLCGKQYSSEQAYKQHLLTkqH 87
                   9******************988666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035560125IPR015880Zinc finger, C2H2-like
PfamPF128740.042221No hitNo description
SuperFamilySSF576672.19E-5233No hitNo description
SMARTSM004510.4232IPR003604Zinc finger, U1-type
PROSITE patternPS000280325IPR007087Zinc finger, C2H2
SMARTSM004511.26094IPR003604Zinc finger, U1-type
SuperFamilySSF576672.41E-86296No hitNo description
SMARTSM003550.00816387IPR015880Zinc finger, C2H2-like
PfamPF121712.1E-76387IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501579.2656392IPR007087Zinc finger, C2H2
PROSITE patternPS0002806587IPR007087Zinc finger, C2H2
SuperFamilySSF576679.52E-8162211No hitNo description
SMARTSM00355240172196IPR015880Zinc finger, C2H2-like
PfamPF127567.3E-27173274IPR015880Zinc finger, C2H2-like
SMARTSM0035514224251IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MTCNACNVTF SDEAAQKVHY RCDWHRYNLK RKVAGLPGVT DAWFEKRREA LAAEATTAER  60
LLYTCTLCGK QYSSEQAYKQ HLLTKQHLKR AAAAPEGSAA PEAKIRPAPV RAPVENGAQR  120
GKELEKEEES EDSDWEEVDG DEVEEEAAGA AHERRGEEST SMEEDGPEWD PTQCLFCGKD  180
HKGDVEACVA HMHSAHGFFI PDVEYVKDLT GMLQYLGFKV SVAHMCLLCD TSGRHFSSME  240
AARKHMADKS HCKLPYEDGP DEELAAFYDF SSSYADADHM QLVSANGAEP GLALSETGTE  300
LIITDSSGES SKVIGSREFA RYYKQRHRPN ERREVALVNQ VVGRYRALGL ATKQHQWTSA  360
TDQGVKQARR LEQQRTRVMM KANVNNNLPR NVPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6qik_z9e-3513846417Cytoplasmic 60S subunit biogenesis factor REH1
6qt0_z9e-3513846417Cytoplasmic 60S subunit biogenesis factor REH1
6qtz_z9e-3513846417Cytoplasmic 60S subunit biogenesis factor REH1
6ri5_z9e-3513846417Cytoplasmic 60S subunit biogenesis factor REH1
6s05_z9e-3513846417Cytoplasmic 60S subunit biogenesis factor REH1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1ICA40.0A0A1Y1ICA4_KLENI; C2H2-type Zn-finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP378422