PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00243_0100
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family GATA
Protein Properties Length: 295aa    MW: 31585.7 Da    PI: 10.0368
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00243_0100genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.1e-18143175133
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                    C nCgttkTplWR+gp+g k+LCnaCG++ +k 
  kfl00243_0100 143 CINCGTTKTPLWRNGPEGYKSLCNACGIRLKKL 175
                    99****************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.035137173IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-15137189IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-15137182No hitNo description
Gene3DG3DSA:3.30.50.109.3E-17139178IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.41E-15142207No hitNo description
PROSITE patternPS003440143168IPR000679Zinc finger, GATA-type
PfamPF003209.7E-16143176IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEVQIMPALN IGGPWQTSAD MIHPWSSLAS SAVGAAVEWQ QDKGDKSPTW SLDVGAVWNA  60
DSPTSKNHSQ PKPIERSSSS MRPLSSHNRR KPLSVRPPLS LAVPPSPVYS GKFSPGNSNR  120
SDLEDPDTPT EADSSKLGSP RTCINCGTTK TPLWRNGPEG YKSLCNACGI RLKKLSKKGT  180
PSAGRSAAPA TPSPKPATKK RSSPLQRGGS SDMTDDIATF SAKRLKVAVG PIKKRWVLEE  240
EVTSSLHSFR GALPRWGVKG GAKVEGYEDE EIGDGDLAVE HGAQLLMMLA YGFAR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I3T50.0A0A1Y1I3T5_KLENI; GATA zinc finger domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.13e-14GATA transcription factor 20