PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00232_0130

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

C2H2

Protein Properties

Length: 1181aa MW: 123337 Da PI: 7.7726

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00232_0130	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	191	213	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H kfl00232_0130 191 FVCEICNKGFQRDQNLQLHRRGH 213 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.6E-5	190	213	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.7E-8	190	213	No hit	No description
SMART	SM00355	0.017	191	213	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	191	213	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	193	213	IPR007087	Zinc finger, C2H2
SMART	SM00355	70	233	263	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.3E-4	256	289	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.7E-8	263	288	No hit	No description
SMART	SM00355	120	268	288	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	200	295	318	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1181 aa Download sequence Send to blast
MFSTNEPQAA AGLTDIRKEN AHTEAQRRQS DGGRGKKLNA PGHTLEEKSR LSLKKVDTPN 60 EVHADVLLKQ NRGDGAEKLD DALPRLAPVK IPSLGAKWEY YSGAPLPQEP QSPDSERDSG 120 ESAQGPTLGK NAGKPSVMRA KSIASSISTG SNFSRSSQGG IKRKRSLPGT PDPNAEVIAL 180 SPRTLLATNR FVCEICNKGF QRDQNLQLHR RGHNVPWKLR ARPPSNSSGK RVYVCPEPTC 240 VHHDPRRALG DLTGIKKHYS RKHGEKRWKC DKCGKKYAVE ADWKAHTKTC GPKQYTCDCG 300 SVFTRRETFA THRACCKHVS DRLQPPGHPQ LSAFGSGPST HSFSNFQLPP SSFSNFGHRP 360 ILPRRLPPPA PVFTARSTPA TVAHIGQSHD GTPLLISVPA RVSGSGQPGL MADINLAARR 420 GLNREPLQLL PLSGPMWGQR SLGTPPPAAS APLPPALNLW LGSRPPATAV HQSQPLQPLA 480 IPGRVGGVKL EIGANGNGLG EMGQSSEGAT SPLSLRYAET FSQGQQTMLV APQTAGRAAS 540 PLLQPLPVSP RPEQQGGDGG SGLVSVLGGD PQAALPSAAA AAAAVAAANA GHQVTIEVNP 600 APGESLPTDH SPREQVAPPE GGAYTVLEQP PVVHPGAPLM GTSPGAPVVQ MSAVALHGGE 660 VAGMGMMEQQ SQGGQLLVAA AQVGGGDQAM LLDAQRPGGE GSPMLVGGGQ VVETNQEDVL 720 WAKMHVDEQQ KAQQAAQQAQ AQAQAQQSMQ HQMAVQQAQQ QGLQMAIHQA GIQLAAAQQA 780 QQQGLQMGGQ VDLQQSLHIS LDAPPSQVAV PGGVPVGLPP PSQQMVATQQ EMLTHAQEAE 840 QQLAAQQGLL NLQAVSQQMG LSAVPPLQRL SPGLPSMAAL HPPPGAELLP GLQQPATSPR 900 SLLAALPSGS ANTTAQGGAA DEGKKADMMQ EAISAAARGS TQKLNELIEQ EAQKQQHALA 960 LAQATEQHQH GGTAPVLAPP SVVLVEGGSP NVLPEGFVDP QAFGTPSAGQ FFATVTPQTG 1020 LTGLGSVPQG GMAAQVVGSS ILGGSMGGGQ LDMNRANLSP REGEQLLRSL SRQHLSELAA 1080 AGMGGVLDVG GALNSVGNQL TMLQSVEEGA MHAERGRQEA LATEQLHSHQ SVASMVASQR 1140 TQADLQQHSH VMGGLYREQD SLTQASLVGD SLGRDNEHPP S

Sequence ? help Back to Top

Protein Sequence Length: 1181 aa Download sequence Send to blast

MFSTNEPQAA AGLTDIRKEN AHTEAQRRQS DGGRGKKLNA PGHTLEEKSR LSLKKVDTPN  60
EVHADVLLKQ NRGDGAEKLD DALPRLAPVK IPSLGAKWEY YSGAPLPQEP QSPDSERDSG  120
ESAQGPTLGK NAGKPSVMRA KSIASSISTG SNFSRSSQGG IKRKRSLPGT PDPNAEVIAL  180
SPRTLLATNR FVCEICNKGF QRDQNLQLHR RGHNVPWKLR ARPPSNSSGK RVYVCPEPTC  240
VHHDPRRALG DLTGIKKHYS RKHGEKRWKC DKCGKKYAVE ADWKAHTKTC GPKQYTCDCG  300
SVFTRRETFA THRACCKHVS DRLQPPGHPQ LSAFGSGPST HSFSNFQLPP SSFSNFGHRP  360
ILPRRLPPPA PVFTARSTPA TVAHIGQSHD GTPLLISVPA RVSGSGQPGL MADINLAARR  420
GLNREPLQLL PLSGPMWGQR SLGTPPPAAS APLPPALNLW LGSRPPATAV HQSQPLQPLA  480
IPGRVGGVKL EIGANGNGLG EMGQSSEGAT SPLSLRYAET FSQGQQTMLV APQTAGRAAS  540
PLLQPLPVSP RPEQQGGDGG SGLVSVLGGD PQAALPSAAA AAAAVAAANA GHQVTIEVNP  600
APGESLPTDH SPREQVAPPE GGAYTVLEQP PVVHPGAPLM GTSPGAPVVQ MSAVALHGGE  660
VAGMGMMEQQ SQGGQLLVAA AQVGGGDQAM LLDAQRPGGE GSPMLVGGGQ VVETNQEDVL  720
WAKMHVDEQQ KAQQAAQQAQ AQAQAQQSMQ HQMAVQQAQQ QGLQMAIHQA GIQLAAAQQA  780
QQQGLQMGGQ VDLQQSLHIS LDAPPSQVAV PGGVPVGLPP PSQQMVATQQ EMLTHAQEAE  840
QQLAAQQGLL NLQAVSQQMG LSAVPPLQRL SPGLPSMAAL HPPPGAELLP GLQQPATSPR  900
SLLAALPSGS ANTTAQGGAA DEGKKADMMQ EAISAAARGS TQKLNELIEQ EAQKQQHALA  960
LAQATEQHQH GGTAPVLAPP SVVLVEGGSP NVLPEGFVDP QAFGTPSAGQ FFATVTPQTG  1020
LTGLGSVPQG GMAAQVVGSS ILGGSMGGGQ LDMNRANLSP REGEQLLRSL SRQHLSELAA  1080
AGMGGVLDVG GALNSVGNQL TMLQSVEEGA MHAERGRQEA LATEQLHSHQ SVASMVASQR  1140
TQADLQQHSH VMGGLYREQD SLTQASLVGD SLGRDNEHPP S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-24	264	321	3	60	Zinc finger protein JACKDAW
5b3h_F	2e-24	264	321	3	60	Zinc finger protein JACKDAW

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00403	DAP	Transfer from AT3G50700	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1I7H9	0.0	A0A1Y1I7H9_KLENI; C2HC zinc fingers superfamily protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP95	16	242

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	5e-87	indeterminate(ID)-domain 2