PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00232_0130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C2H2 | ||||||||
Protein Properties | Length: 1181aa MW: 123337 Da PI: 7.7726 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.9 | 3.8e-05 | 191 | 213 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H kfl00232_0130 191 FVCEICNKGFQRDQNLQLHRRGH 213 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.6E-5 | 190 | 213 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.7E-8 | 190 | 213 | No hit | No description |
SMART | SM00355 | 0.017 | 191 | 213 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 191 | 213 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 193 | 213 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 70 | 233 | 263 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 256 | 289 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.7E-8 | 263 | 288 | No hit | No description |
SMART | SM00355 | 120 | 268 | 288 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 200 | 295 | 318 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1181 aa Download sequence Send to blast |
MFSTNEPQAA AGLTDIRKEN AHTEAQRRQS DGGRGKKLNA PGHTLEEKSR LSLKKVDTPN 60 EVHADVLLKQ NRGDGAEKLD DALPRLAPVK IPSLGAKWEY YSGAPLPQEP QSPDSERDSG 120 ESAQGPTLGK NAGKPSVMRA KSIASSISTG SNFSRSSQGG IKRKRSLPGT PDPNAEVIAL 180 SPRTLLATNR FVCEICNKGF QRDQNLQLHR RGHNVPWKLR ARPPSNSSGK RVYVCPEPTC 240 VHHDPRRALG DLTGIKKHYS RKHGEKRWKC DKCGKKYAVE ADWKAHTKTC GPKQYTCDCG 300 SVFTRRETFA THRACCKHVS DRLQPPGHPQ LSAFGSGPST HSFSNFQLPP SSFSNFGHRP 360 ILPRRLPPPA PVFTARSTPA TVAHIGQSHD GTPLLISVPA RVSGSGQPGL MADINLAARR 420 GLNREPLQLL PLSGPMWGQR SLGTPPPAAS APLPPALNLW LGSRPPATAV HQSQPLQPLA 480 IPGRVGGVKL EIGANGNGLG EMGQSSEGAT SPLSLRYAET FSQGQQTMLV APQTAGRAAS 540 PLLQPLPVSP RPEQQGGDGG SGLVSVLGGD PQAALPSAAA AAAAVAAANA GHQVTIEVNP 600 APGESLPTDH SPREQVAPPE GGAYTVLEQP PVVHPGAPLM GTSPGAPVVQ MSAVALHGGE 660 VAGMGMMEQQ SQGGQLLVAA AQVGGGDQAM LLDAQRPGGE GSPMLVGGGQ VVETNQEDVL 720 WAKMHVDEQQ KAQQAAQQAQ AQAQAQQSMQ HQMAVQQAQQ QGLQMAIHQA GIQLAAAQQA 780 QQQGLQMGGQ VDLQQSLHIS LDAPPSQVAV PGGVPVGLPP PSQQMVATQQ EMLTHAQEAE 840 QQLAAQQGLL NLQAVSQQMG LSAVPPLQRL SPGLPSMAAL HPPPGAELLP GLQQPATSPR 900 SLLAALPSGS ANTTAQGGAA DEGKKADMMQ EAISAAARGS TQKLNELIEQ EAQKQQHALA 960 LAQATEQHQH GGTAPVLAPP SVVLVEGGSP NVLPEGFVDP QAFGTPSAGQ FFATVTPQTG 1020 LTGLGSVPQG GMAAQVVGSS ILGGSMGGGQ LDMNRANLSP REGEQLLRSL SRQHLSELAA 1080 AGMGGVLDVG GALNSVGNQL TMLQSVEEGA MHAERGRQEA LATEQLHSHQ SVASMVASQR 1140 TQADLQQHSH VMGGLYREQD SLTQASLVGD SLGRDNEHPP S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-24 | 264 | 321 | 3 | 60 | Zinc finger protein JACKDAW |
5b3h_F | 2e-24 | 264 | 321 | 3 | 60 | Zinc finger protein JACKDAW |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00403 | DAP | Transfer from AT3G50700 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1I7H9 | 0.0 | A0A1Y1I7H9_KLENI; C2HC zinc fingers superfamily protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 5e-87 | indeterminate(ID)-domain 2 |