PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00226_0130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C3H | ||||||||
Protein Properties | Length: 609aa MW: 64642.7 Da PI: 4.3067 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.8 | 6.5e-12 | 84 | 108 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f++rtG C+yG+ CkF H+ kfl00226_0130 84 GEQKCSFYMRTGKCSYGSDCKFDHP 108 6678********************8 PP | |||||||
2 | zf-CCCH | 29.9 | 9.3e-10 | 131 | 155 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +f+++GtCk+G++CkF H+ kfl00226_0130 131 GQPHCAYFLKNGTCKFGSTCKFDHP 155 5677********************8 PP | |||||||
3 | zf-CCCH | 38.2 | 2.4e-12 | 197 | 221 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC+ff++tG CkyG CkF H++ kfl00226_0130 197 EPLCQFFRKTGDCKYGVLCKFDHPE 221 79*********************96 PP | |||||||
4 | zf-CCCH | 35 | 2.3e-11 | 266 | 291 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C ++ rtGtC+yG++Ck++H+ kfl00226_0130 266 PGQPECAYYIRTGTCQYGATCKYNHP 291 5789*********************9 PP | |||||||
5 | zf-CCCH | 32.2 | 1.9e-10 | 327 | 350 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 lC ++++tG Cky + CkF H+p kfl00226_0130 327 TLCAYYMKTGLCKYAPDCKFDHPP 350 69********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.173 | 82 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 84 | 108 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-5 | 85 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 88 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 129 | 157 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.9E-4 | 129 | 156 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-5 | 132 | 155 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-7 | 132 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-6 | 194 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 194 | 222 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.8E-10 | 197 | 221 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-5 | 197 | 222 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-5 | 199 | 220 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-5 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.765 | 265 | 293 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-8 | 267 | 291 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 268 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-4 | 271 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.295 | 323 | 351 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 323 | 350 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 326 | 350 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-7 | 327 | 350 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 328 | 348 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MYVLREDTLQ SRYAVPSDRL QAQYYAGSGA GHYDESTLRA ASQRYYDEGS KRLRTTYPET 60 YQDPRSARYQ AHAAPTGGYP QRPGEQKCSF YMRTGKCSYG SDCKFDHPAW VPPEGIPGWK 120 EEEGEFPQRP GQPHCAYFLK NGTCKFGSTC KFDHPGAKPF AGRSVAAAPV ERLGLRSDVF 180 GTTAPMNSKG LPLRPSEPLC QFFRKTGDCK YGVLCKFDHP EPGSSKRKRA SDDDLQDVPL 240 YAVLPGSSYA GNAAPPARAV ALPQRPGQPE CAYYIRTGTC QYGATCKYNH PLPLSKRTEQ 300 TKAKPAKASP PAAGLTPAGL PRRPGATLCA YYMKTGLCKY APDCKFDHPP PGEAAKMAYR 360 AAAAEKAAPP AAGSAGGVPS KDQKVEEQSA AQTVENVAVG NTDGQGEAVR IEEKAPEEAE 420 KEGLAEQEGG GFEGEAWSPE AGVETEAEEG ADVVGGEHVS EGAVEGNAGA EQEAGAAEGE 480 TPAEAAEQGP VETAPTEAAE QGPVETALTE DAEKEAVLPS QAEVEQAIEN EAMQADEAEV 540 AQAAVPAEGP GTVEQEEQAG GENDGDELDF VDAEGLENED AEGYEGGLEH ESMLEGGVDL 600 NAEPTDEVE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1I982 | 0.0 | A0A1Y1I982_KLENI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6754 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 7e-53 | floral homeotic protein (HUA1) |