PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00223_0160
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 346aa    MW: 37135.2 Da    PI: 10.1247
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00223_0160genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.92.2e-15239265127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    yktelCr + +tG C+yG++C+FaHg+
  kfl00223_0160 239 YKTELCRSWEETGACRYGAKCQFAHGR 265
                    9************************96 PP
2zf-CCCH45.61.1e-14277302126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykte+Cr+f+ +GtC+yG rC+F+Hg
  kfl00223_0160 277 YKTEICRTFSTNGTCPYGTRCRFIHG 302
                    9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.7E-20234270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-10237269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.568238266IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-9238265IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-12239265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-15272303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-9273303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211276304IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-9276303IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-11277302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSKASVRKHM NFRDALERRL FQTPLELANS KEEMEIGGPR YLGDPSLGDL DAHSLSQAFH  60
RMRIQQQVAL QTERILALRT PPGGISRADY AGWETPSPPH TPIGGFHRAE SPVSPFVKSL  120
GMGGGSTSPR SVVDAHVAEA YKKLFGEEPF GRDVASPGIR GRSAPGPTDA VPSLSLPPAQ  180
VDLFLHNQLI LRELLLRDPA RAAALLGGLG SPKPSTPGTP RGLDAAGKLG QPQAQNSLYK  240
TELCRSWEET GACRYGAKCQ FAHGREELRE IQRHPKYKTE ICRTFSTNGT CPYGTRCRFI  300
HGSAPPKKDA PLARSSSGGR RLPIFATLAP EAAAAAAAAA AAPIRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A4e-27230302173Tristetraproline
1rgo_A3e-27239303468Butyrate response factor 2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I2N90.0A0A1Y1I2N9_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.19e-25C3H family protein