PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00198_0060
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C2H2
Protein Properties Length: 357aa    MW: 38127.8 Da    PI: 8.8022
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00198_0060genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000136082123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C+ C   Fs + +L++H+  H
  kfl00198_0060 60 HICEVCAIAFSKPAHLRQHLVIH 82
                   68*****************9887 PP
2zf-C2H2219e-0788112123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    ++Cp   C ++F+r+++L+rH+ +H
  kfl00198_0060  88 FPCPhaGCARTFKRQDHLRRHLLSH 112
                    89********************999 PP
3zf-C2H212.70.00038118141223
                    EET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                    +Cp   C+ ++s ++nL+ H ++H
  kfl00198_0060 118 PCPipGCPVTCSLPDNLRAHVKRH 141
                    69999******************9 PP
4zf-C2H2171.7e-05175200123
                    EEET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                    + C+   C+k+F+ +s+L+ H+ + H
  kfl00198_0060 175 HMCQepGCSKRFKFRSLLTAHQASvH 200
                    578888****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.0E-105781IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.68E-1158112No hitNo description
SMARTSM003550.0656082IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.4226087IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-1482114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138940.001388112No hitNo description
SMARTSM003554.0E-488112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.47188113IPR007087Zinc finger, C2H2
PROSITE patternPS00028090112IPR007087Zinc finger, C2H2
SMARTSM003550.024117141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119141IPR007087Zinc finger, C2H2
SMARTSM003553.8146171IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141175200IPR007087Zinc finger, C2H2
SMARTSM003550.093175200IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4175196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280177200IPR007087Zinc finger, C2H2
SMARTSM003550.081262287IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.8E-4262285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280264287IPR007087Zinc finger, C2H2
SMARTSM003551.6293318IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280295318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGPVKHEDGG DSTDGGDGTD SGRLRKKSLR GASGKAACSL RLEQQQPEEE QVGTSSERQH  60
ICEVCAIAFS KPAHLRQHLV IHTGQRPFPC PHAGCARTFK RQDHLRRHLL SHSQPVLPCP  120
IPGCPVTCSL PDNLRAHVKR HQAACFRCSE PECTFETAFK RQLWEHTRSC HASGHMCQEP  180
GCSKRFKFRS LLTAHQASVH GFTANRAAPL VSNIGASSNT NRGPGCKDAQ ECSTPRPGDS  240
GRSSSGAATS TDEEAGSGPP GLACPVPGCT AQFRLRRSLK QHLTVAHLKE ARHPCSTAGC  300
PASFFTEADR ARHSATKHPP AGVGVATGGA SQSGMQAARQ RPSIASILDQ PTFADPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A8e-125820211162PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D8e-125820211162PROTEIN (TRANSCRIPTION FACTOR IIIA)
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I1380.0A0A1Y1I138_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP29811627
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.22e-18transcription factor IIIA