PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00192_0070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C2H2 | ||||||||
Protein Properties | Length: 201aa MW: 22640.3 Da PI: 7.8383 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 113 | 136 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk+F++ ++H r H kfl00192_0070 113 VCPyeGCGKVFPDMGAIRKHARIH 136 79999*****************99 PP | |||||||
2 | zf-C2H2 | 20.1 | 1.7e-06 | 141 | 165 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk+F ++s LkrH H kfl00192_0070 141 YQCTfeGCGKRFVDSSKLKRHFLIH 165 99*******************8877 PP | |||||||
3 | zf-C2H2 | 21 | 8.7e-07 | 172 | 196 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 Cp C k Fs ++nL++H r+ H kfl00192_0070 172 ICPyeGCRKAFSLPYNLRSHVRStH 196 69999*****************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.19E-7 | 103 | 152 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-10 | 111 | 138 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.64 | 112 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.4E-4 | 112 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 114 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.2E-14 | 139 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 2.7E-4 | 141 | 165 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 14.669 | 141 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 143 | 165 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.79E-12 | 152 | 199 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-17 | 162 | 196 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.003 | 171 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.055 | 171 | 201 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 173 | 196 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEAAGPMIDS ANGVSSNWGE EGLQEADEQR PEQETPSSRY GTSQDGQPPL WVRRWVETSS 60 SIAPGKIQVL KWVKYDPQDD VSQGTPAQTE APLTSPTSGQ KRRRRETPNQ EIVCPYEGCG 120 KVFPDMGAIR KHARIHGEKA YQCTFEGCGK RFVDSSKLKR HFLIHTGEKS WICPYEGCRK 180 AFSLPYNLRS HVRSTHDPEF T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ubd_C | 2e-26 | 112 | 193 | 6 | 85 | PROTEIN (YY1 ZINC FINGER DOMAIN) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010930779.1 | 9e-44 | zinc finger transcription factor YY1 | ||||
TrEMBL | A0A1Y1I6Z9 | 1e-149 | A0A1Y1I6Z9_KLENI; Uncharacterized protein | ||||
STRING | XP_008781553.1 | 1e-42 | (Phoenix dactylifera) | ||||
STRING | XP_008807673.1 | 1e-42 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3856 | 16 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06634.1 | 3e-40 | C2H2 family protein |