PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00178_0130

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

GATA

Protein Properties

Length: 1692aa MW: 179495 Da PI: 9.8744

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00178_0130	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	37.2	4.1e-12	424	456	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C Cgt kT+ WRrgp g tLC CG++y ++ kfl00178_0130 424 CFDCGTEKTTAWRRGPLGDNTLCQTCGVRYWLM 456 99***************************9766 PP
2	GATA	26.5	8.9e-09	511	545	1	32
GATA 1 CsnCgt...tkTplWRrgpdgnktLCnaCGlyyrk 32 C +Cg tk ++WR gp g+ tLCn CGl +r+ kfl00178_0130 511 CMQCGKwrrTKLSQWRTGPPGKETLCNECGLQFRR 545 66666433388**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	1.3E-6	418	474	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.807	418	473	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	9.98E-10	419	461	No hit	No description
Gene3D	G3DSA:3.30.50.10	4.0E-10	421	460	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.60E-7	423	453	No hit	No description
Pfam	PF00320	5.5E-9	424	456	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	2.19E-5	504	547	No hit	No description
SMART	SM00401	3.6E-4	505	563	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.7E-6	506	546	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.49E-6	510	547	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1692 aa Download sequence Send to blast
MAVGGAGATR EEWRKRAVTH LSVPDSFPAG EELFVPQPFE KGAVIETRSF QTGFRGAWFL 60 SEVVAFHTDR SMPTQQVTIR NLSYPDDKPS KMCLYQVDPN DRGSRYLMVR PIPPRNIPFG 120 EDAPNPGQTD QPVFKHERQN LRPTLRWAGK RWHMLKNLTG PLGKIVVPVG GSGSPAIEAP 180 GAVGGSESKT TGTPRKRGGS AGGSNKETEE APNGLVGGLG SAAKETPRKR PGSAGGTKAE 240 AKATPRKRAG SAGGSKPEAK GTPGKRPCGP ATEAGPERVA KAGKPAADAS AARTKPTPKP 300 GMSEKGAETL TERSPPRVRP PPKVRTPPEV KKPPEKQESP KVRILHEVQD SSKPRLQPET 360 LSLPKVHIPE KVQTPEEART PPKVQNSPRP RHLYKVGERP PEDAGPPEGG QTEERPRGVP 420 GRKCFDCGTE KTTAWRRGPL GDNTLCQTCG VRYWLMKLRE KRLGRSETFE RERIEAVQNP 480 GPEGATGGSG LGMTGGGAPE VTADGGPEKS CMQCGKWRRT KLSQWRTGPP GKETLCNECG 540 LQFRRLGPDW VPGGALLLAE STAPVQAGAG RYLAKRGEPT KGLRSTSAGP IGQKGGTKTG 600 VEEGWWRKPG LGSGSFFDKK IDRSALEGKG TEKLTSSANG DPFRLQRPPA SFAGPPGKPR 660 QGPPAEKKRA ARDLESSSLS ESSKRMRIQG NSVRSASARI IGQALRNVRI RPDASGASEK 720 AVSGNAASEK AVSVNAASES KERNVERERT AAGDEGAQAK GIWTQPDASA AAECDVSESM 780 APEKNVETES EGAEQKEAKA ERERKQRAEA RRKKRERVWR LKAQLACSIG EPKGQKVARL 840 KAQLACSVGE PIGKRKRLTR QEARREDGEV GVKSGAAKGG PTSGKRIDVE KGGLTRNRGA 900 SDTGGVDRGL SSAAKKLAVY EKLKRVVGGS DKVTRPKGRP KRGRPKKGAA QESPRRNPKR 960 GRKSDEEESS EESDPLRGGI NEGKESAGVR EKEKQGVSKP PKQKGPGRPV FWGVNLDELI 1020 VEEEFELPEK VRARAERERR EVRRRLSEVS GAGGEAGSSG RDPSGIEEVL IHSVKVPGKT 1080 SRGESVVESK KAGARSDAAG LETGRARCFA GVLTEIGAGE TPLLGQEGAD DSGGSRASET 1140 IPLGSAHKVA SSGGGAGTSG RTPPEIEQPP RPDEFDLTEE LVSCLDKSEA LSAAEELLSR 1200 WEEVSLDEVR GLFLMVNLWS PDEESLKDPV GWYRDKIEAL AFREQRFVEV GSGGNAGVFR 1260 KWAVKDDDRD ATTEGERRLG FSERLEAAKD GPLGTAPLEA GVNYADVSTA APQARSREPL 1320 GTFPVSGTFD AEAANVPAPT SASLANPTSK TAEISSVPGS RGEAVRRDLL SSDVLPGPGA 1380 SVARTLSEGM ADDRGGGLES SDGVNPKKGL NKDDEREPIG GPVPDNGLRG NDTISSKELS 1440 PNGRLDLTGG LHLGQGLAAG GTLDSEWGVV LDKAMGVEKE LNANGGLGSH GGLRSDGDPN 1500 KDEVLRSAKG PVSDGALKGP SSDAGLDLNG GPRADERDQG LETDVVRTLD GGLDMDEGLD 1560 SDAGLRADAG PNLGGEPNKE EASNADRRLF SHVKVAVSVG LHSDRGLPAD DGLTQKDVRK 1620 SVEALHLGER KDPNDGHTAN KAAQRSNGRE GMMRVEKKRL VEDSERSGGM GLEGSGGGVT 1680 GNALETQQAS RW

Sequence ? help Back to Top

Protein Sequence Length: 1692 aa Download sequence Send to blast

MAVGGAGATR EEWRKRAVTH LSVPDSFPAG EELFVPQPFE KGAVIETRSF QTGFRGAWFL  60
SEVVAFHTDR SMPTQQVTIR NLSYPDDKPS KMCLYQVDPN DRGSRYLMVR PIPPRNIPFG  120
EDAPNPGQTD QPVFKHERQN LRPTLRWAGK RWHMLKNLTG PLGKIVVPVG GSGSPAIEAP  180
GAVGGSESKT TGTPRKRGGS AGGSNKETEE APNGLVGGLG SAAKETPRKR PGSAGGTKAE  240
AKATPRKRAG SAGGSKPEAK GTPGKRPCGP ATEAGPERVA KAGKPAADAS AARTKPTPKP  300
GMSEKGAETL TERSPPRVRP PPKVRTPPEV KKPPEKQESP KVRILHEVQD SSKPRLQPET  360
LSLPKVHIPE KVQTPEEART PPKVQNSPRP RHLYKVGERP PEDAGPPEGG QTEERPRGVP  420
GRKCFDCGTE KTTAWRRGPL GDNTLCQTCG VRYWLMKLRE KRLGRSETFE RERIEAVQNP  480
GPEGATGGSG LGMTGGGAPE VTADGGPEKS CMQCGKWRRT KLSQWRTGPP GKETLCNECG  540
LQFRRLGPDW VPGGALLLAE STAPVQAGAG RYLAKRGEPT KGLRSTSAGP IGQKGGTKTG  600
VEEGWWRKPG LGSGSFFDKK IDRSALEGKG TEKLTSSANG DPFRLQRPPA SFAGPPGKPR  660
QGPPAEKKRA ARDLESSSLS ESSKRMRIQG NSVRSASARI IGQALRNVRI RPDASGASEK  720
AVSGNAASEK AVSVNAASES KERNVERERT AAGDEGAQAK GIWTQPDASA AAECDVSESM  780
APEKNVETES EGAEQKEAKA ERERKQRAEA RRKKRERVWR LKAQLACSIG EPKGQKVARL  840
KAQLACSVGE PIGKRKRLTR QEARREDGEV GVKSGAAKGG PTSGKRIDVE KGGLTRNRGA  900
SDTGGVDRGL SSAAKKLAVY EKLKRVVGGS DKVTRPKGRP KRGRPKKGAA QESPRRNPKR  960
GRKSDEEESS EESDPLRGGI NEGKESAGVR EKEKQGVSKP PKQKGPGRPV FWGVNLDELI  1020
VEEEFELPEK VRARAERERR EVRRRLSEVS GAGGEAGSSG RDPSGIEEVL IHSVKVPGKT  1080
SRGESVVESK KAGARSDAAG LETGRARCFA GVLTEIGAGE TPLLGQEGAD DSGGSRASET  1140
IPLGSAHKVA SSGGGAGTSG RTPPEIEQPP RPDEFDLTEE LVSCLDKSEA LSAAEELLSR  1200
WEEVSLDEVR GLFLMVNLWS PDEESLKDPV GWYRDKIEAL AFREQRFVEV GSGGNAGVFR  1260
KWAVKDDDRD ATTEGERRLG FSERLEAAKD GPLGTAPLEA GVNYADVSTA APQARSREPL  1320
GTFPVSGTFD AEAANVPAPT SASLANPTSK TAEISSVPGS RGEAVRRDLL SSDVLPGPGA  1380
SVARTLSEGM ADDRGGGLES SDGVNPKKGL NKDDEREPIG GPVPDNGLRG NDTISSKELS  1440
PNGRLDLTGG LHLGQGLAAG GTLDSEWGVV LDKAMGVEKE LNANGGLGSH GGLRSDGDPN  1500
KDEVLRSAKG PVSDGALKGP SSDAGLDLNG GPRADERDQG LETDVVRTLD GGLDMDEGLD  1560
SDAGLRADAG PNLGGEPNKE EASNADRRLF SHVKVAVSVG LHSDRGLPAD DGLTQKDVRK  1620
SVEALHLGER KDPNDGHTAN KAAQRSNGRE GMMRVEKKRL VEDSERSGGM GLEGSGGGVT  1680
GNALETQQAS RW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1I7R9	0.0	A0A1Y1I7R9_KLENI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	8e-10	GATA transcription factor 12