PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00147_0060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 16935.5 Da PI: 7.5035 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146 | 1e-45 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC++dC +apyfp +qp+kfanvhk+FGasn++kll++lp ++reda++sl+yeA+ar++dPvyG+vg i+ lqqq+++l+aela kfl00147_0060 9 PCAACKFLRRKCTPDCLFAPYFPPDQPQKFANVHKIFGASNITKLLHDLPLSQREDAVNSLAYEADARVKDPVYGCVGAISVLQQQVAHLQAELAI 104 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e kfl00147_0060 105 AHAE 108 9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.031 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-44 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MAGPSQMSPC AACKFLRRKC TPDCLFAPYF PPDQPQKFAN VHKIFGASNI TKLLHDLPLS 60 QREDAVNSLA YEADARVKDP VYGCVGAISV LQQQVAHLQA ELAIAHAELT RIHTTTVPPL 120 QDDHENPAVL SVAMSSRPLV SQALASYAGL KPDSMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-57 | 4 | 111 | 6 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-57 | 4 | 111 | 6 | 113 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024356367.1 | 4e-61 | protein LATERAL ORGAN BOUNDARIES-like isoform X1 | ||||
Swissprot | Q8L8Q3 | 8e-55 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
Swissprot | Q8LBW3 | 2e-54 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A1Y1I1U4 | 1e-111 | A0A1Y1I1U4_KLENI; Lateral organ boundaries (LOB) domain-containing protein | ||||
STRING | PP1S170_93V6.1 | 1e-60 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 4e-57 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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