PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | kfl00134_0260 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
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Family | C3H | ||||||||
Protein Properties | Length: 122aa MW: 14065.6 Da PI: 7.9107 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.3 | 9.7e-12 | 49 | 72 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +e Cr+f r G+C yGdrCk++H+ kfl00134_0260 49 REVCRNFVRQGFCTYGDRCKYHHP 72 899********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.25E-13 | 3 | 45 | No hit | No description |
Pfam | PF06220 | 1.2E-8 | 4 | 38 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 15.14 | 47 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-7 | 47 | 73 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-8 | 49 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 49 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-8 | 50 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MPVPKYHCDY CDVTFRDSRE QRKRHQEGFN HRRNKKAWFD NIEGGVETRE VCRNFVRQGF 60 CTYGDRCKYH HPAQQPQEVQ LVQAAPIDAT NVWHGSQSDL PPSLQPPPPG GWPASAFTAD 120 WG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1I1L9 | 2e-87 | A0A1Y1I1L9_KLENI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8539 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 4e-16 | C3H family protein |