PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00120_0220
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family DBB
Protein Properties Length: 1277aa    MW: 135984 Da    PI: 6.5977
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00120_0220genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.72.4e-08956998441
       zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41 
                    + C+e+e +++ l C +C+q lC dC+ + H+g     H++++
  kfl00120_0220 956 QPCDECEAQRAALECAECEQALCSDCCASLHSGgarraHRLTS 998
                    68*****************************889999999887 PP
2zf-B_box26.21.7e-0810021045341
       zf-B_box    3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41  
                     ++ C+e+e   +   C +C+q lC++C+ ++H+      H v p
  kfl00120_0220 1002 PWQCEECEGASAAVSCGECEQALCASCSAKIHSKgararHAVAP 1045
                     689*****************************667888998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5003011.728266306IPR015940Ubiquitin-associated domain
SuperFamilySSF469348.11E-8267306IPR009060UBA-like
SMARTSM001655.0E-5268305IPR015940Ubiquitin-associated domain
Gene3DG3DSA:1.10.8.101.4E-8269306No hitNo description
PfamPF006271.3E-7269303IPR015940Ubiquitin-associated domain
PROSITE profilePS509669.025324355IPR007527Zinc finger, SWIM-type
Gene3DG3DSA:3.40.50.101305.4E-12667803IPR020819DNA repair nuclease, XPF-type/Helicase
SMARTSM008918.7E-6669774IPR006166ERCC4 domain
SuperFamilySSF529805.36E-10703782IPR011335Restriction endonuclease type II-like
PfamPF027323.0E-5708773IPR006166ERCC4 domain
PROSITE profilePS5011910.438953999IPR000315B-box-type zinc finger
SMARTSM003360.068953999IPR000315B-box-type zinc finger
CDDcd000211.86E-5957988No hitNo description
SMARTSM003367.3E-410001046IPR000315B-box-type zinc finger
PfamPF006435.2E-710011045IPR000315B-box-type zinc finger
CDDcd000212.79E-410031046No hitNo description
PROSITE profilePS5011910.39510051046IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006259Biological ProcessDNA metabolic process
GO:0005622Cellular Componentintracellular
GO:0003677Molecular FunctionDNA binding
GO:0004518Molecular Functionnuclease activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1277 aa     Download sequence    Send to blast
MEIGMVKGIG VQIKKLLEKV YNGDVEEIPP EAEEAMEYGD LPIPQGFAYI PGPNTGARAI  60
LIAMFGETKR PGYPGFLMKD QIQAAATATG ISNTSMYPQP NVGRFYSGWD GIRTLEENGL  120
VLRTKHGMGV KEQFRLTDQG RQLAYFLEGE LGLQQGGRQD GGVALPQDFS PAHRRLSGHC  180
QGRQAGEGGF PEVMIGRGRE IEMGSNLQQV EEVEAATGEG FRLYKAVCKS SSAVRKKYAV  240
QLHVRVTLAR DAEVEQAEAL GRVFAGRRPE LVARLKEMGF SEDRVLAALA ATGADEAAAV  300
QMLVDGASMQ RDESGTAAPG GVTQMVVVRS ECACPEGRSS HGKCKHAAAL FLRVDAHLRS  360
GAELDRPEPG KKKTPRKKRE NGDGGLQAKT APKRRKSGGG AEAPLPREED RSLGAIAAQL  420
AKSVGSPITP PKHKDVARTP VGASPREMAA QAAFERAAMQ ASLRKDSPTR APPVEKGTGQ  480
RNVDFVDLEG GLGRAHERHE SDQGVRRAVS ANKESRSETW KGKEAARDAL HGSMLNLGRA  540
TPGKGKAVAF VDLDSDCDDP PGQRDADSEE DAALLSVDWK SPRASWGSGW SSAATPASDH  600
REKSGGRRGE EAGRGRSLDL DWLTGDNAPD PAELDRLVDT VTATAEPGSA PSASGRKQGG  660
EVGGVRRVTV VVDETERQTN SNPNSVYLEL HRQHEALHAV AGVALAAEKH KLETGDYLWL  720
AETDEGSFVL DTVIERKTMS DLVTRSVTNA HLKQIQKMRA SGLPHVCLLL EGEFRTARKF  780
VAVAGQDCRG DVDSAEAVWQ LMAELLIGTA KGMDVPQGVP IGSGYGPPPP VRVLQTKDVK  840
GTCKLLTHIS AALAARVGGG LEGGEAASAA ASRQISLEDF NKEARQRRTK MNKLLKEAEG  900
RAIESRVGDD GLEDPGERRG FADEVQRLSA DPDAGVGPSA AQARSGVADA SAQGGQPCDE  960
CEAQRAALEC AECEQALCSD CCASLHSGGA RRAHRLTSLP PPWQCEECEG ASAAVSCGEC  1020
EQALCASCSA KIHSKGARAR HAVAPLSLAP MQPTSRVSTP PDTHDSVERS GRALMVASSS  1080
VYASLRTVDL GPRVALEQTR GERDRGPVEE SLYLGLADPG GAAGRAGERE AFWVVLVKGD  1140
AFLRGMIQSQ VAVSGASSAT CPEPDLQAAA VLFLTSLPDP PCPSAHSPGK ILILENVLHH  1200
CRAMAAAAER ARLNGAAGPG EDGDQELRAF LGCHDLNEEM IRWIVRIMFS RGWNVQFTGN  1260
QLESSLLFRH LAKAYVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376395KKRENGDGGLQAKTAPKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I3L50.0A0A1Y1I3L5_KLENI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.14e-06CONSTANS-like 5