PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00113_0180

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

HB-other

Protein Properties

Length: 585aa MW: 62781.4 Da PI: 10.0237

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00113_0180	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.5	1.1e-08	475	509	20	54
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRak 54 + ++yp ++e+++LAk+ gL+ +qV +WF N R + kfl00113_0180 475 QDSPYPAENEKQRLAKRAGLELQQVNNWFINERKR 509 669******************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03790	7.9E-6	180	215	IPR005540	KNOX1
Pfam	PF03791	1.1E-4	341	372	IPR005541	KNOX2
PROSITE profile	PS50071	12.26	450	513	IPR001356	Homeobox domain
SMART	SM00389	7.6E-8	452	517	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.8E-13	452	519	IPR009057	Homeodomain-like
CDD	cd00086	2.89E-9	453	513	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.0E-22	456	515	IPR009057	Homeodomain-like
Pfam	PF05920	1.1E-15	470	509	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MATHSAEAHR PGSPTSPLEA LPRSASAPQL PSYSTLYAGL PLSIQEDSPL GFSVFDNLPS 60 GSNFNFPPRA PGGNLSPRAL GGDLSPRALA GSFSPGALGG NLSTRALPPF PPGGNLSPQA 120 LSPFSPGRNL SPQALLPFPP GANLNFSPGA LGGSLSPPAL SPLSLEALTR SPGQYPEADA 180 IRRHDRYPEL VGRLMDCLKV GASENEIRRL DAHRRCLVEE SRGRAAGQGA SAREPGLDKV 240 MLIEKQSSGR LLVRNRLFVC CRIGAPTGGH VAAAHVTSSL TRTHLLTAPD DVTSDLTNII 300 LYFVDVMLTT HEITCQQKQT LQQPSDDANE FLSLTSSEVT CQQLVALKQQ LQQPFDDANA 360 FCSDVERRLA EIGLSRATKK PGKRREKSPS LTPWKGLDLE EEEPAAGPAD AGAAGVLALV 420 GAAGPADMGA LKARMIALHG PAIARMDIDT WKKEPKARLP AAAIKVMRGW WAKHQDSPYP 480 AENEKQRLAK RAGLELQQVN NWFINERKRH WTKAERRAEP RPAASPKVRA KPRGFAKARK 540 RGAVAQAPRI VLGGHVAHDD GQMVNSTAYM QGRGLQMEGQ VYNHL

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MATHSAEAHR PGSPTSPLEA LPRSASAPQL PSYSTLYAGL PLSIQEDSPL GFSVFDNLPS  60
GSNFNFPPRA PGGNLSPRAL GGDLSPRALA GSFSPGALGG NLSTRALPPF PPGGNLSPQA  120
LSPFSPGRNL SPQALLPFPP GANLNFSPGA LGGSLSPPAL SPLSLEALTR SPGQYPEADA  180
IRRHDRYPEL VGRLMDCLKV GASENEIRRL DAHRRCLVEE SRGRAAGQGA SAREPGLDKV  240
MLIEKQSSGR LLVRNRLFVC CRIGAPTGGH VAAAHVTSSL TRTHLLTAPD DVTSDLTNII  300
LYFVDVMLTT HEITCQQKQT LQQPSDDANE FLSLTSSEVT CQQLVALKQQ LQQPFDDANA  360
FCSDVERRLA EIGLSRATKK PGKRREKSPS LTPWKGLDLE EEEPAAGPAD AGAAGVLALV  420
GAAGPADMGA LKARMIALHG PAIARMDIDT WKKEPKARLP AAAIKVMRGW WAKHQDSPYP  480
AENEKQRLAK RAGLELQQVN NWFINERKRH WTKAERRAEP RPAASPKVRA KPRGFAKARK  540
RGAVAQAPRI VLGGHVAHDD GQMVNSTAYM QGRGLQMEGQ VYNHL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0U9HJH2	1e-162	A0A0U9HJH2_KLENI; Homeobox protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-15	KNOTTED-like homeobox of Arabidopsis thaliana 7