PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00108_0100
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family GATA
Protein Properties Length: 766aa    MW: 83863.3 Da    PI: 8.4779
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00108_0100genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.96.7e-144272131
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31
                   C  Cgtt+Tp+WR+gp g+ktLCn CG+++ 
  kfl00108_0100 42 CGVCGTTNTPCWRKGPAGPKTLCNRCGVHWY 72
                   889**************************95 PP
2WRC29.51.3e-09121152233
            WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlh 33 
                    +++ rC +++G++WRCs+r ++g+++C +H+ 
  kfl00108_0100 121 PDSQRCVKSNGRGWRCSQRKVSGYSYCAHHQR 152
                    7899************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.2E-93695IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.7123689IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.7E-113977No hitNo description
Gene3DG3DSA:3.30.50.101.9E-123982IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.13E-104171No hitNo description
PfamPF003201.6E-114271IPR000679Zinc finger, GATA-type
PROSITE profilePS5166714.913120167IPR014977WRC domain
PfamPF088794.2E-8121151IPR014977WRC domain
Gene3DG3DSA:3.30.40.101.2E-8624673IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-8725738IPR013083Zinc finger, RING/FYVE/PHD-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MKGSVLSAAG QSMLSDEEFA DSLLLITQRP LCKGDDLSKQ RCGVCGTTNT PCWRKGPAGP  60
KTLCNRCGVH WYQNKDRWDL IVEELRATRM DDTVEQASAP TRTVIKKKVD PRSAEAHPAV  120
PDSQRCVKSN GRGWRCSQRK VSGYSYCAHH QRNWDGHEKQ WRKAFPNLVY PRKSKKAAVV  180
ADGGVAVQKD GTVRKRERKP KHPGGGVALP EKWGRSSNVH RTQFGRDSDG SSEPDYVDSR  240
LGKVRAKSYG VRSPRGPAKE GSGSMMHLVL PSETDELGGM RPTYMSDDDD SQLYHGTQLS  300
EEPGESSESA KEVRSPNQNR ADLQPKQEPS IRSEVTTLSP PLKASHPEPP TENQRCVMKG  360
GTGWQCPRPR QSGLRHCQYH TEARRAKAAL QNGLVGKQNG SGAGDDDTLS SMEILMRLQL  420
KRKRSEEENE TRRDGLAGSG LGLTWKTKMR RRPFSSRGGP VADVKQGSDL SQDSPRPKRE  480
IDPPETEWGG RREEEDDAAY LGVEELRRRL EQSRGAVAAQ QERNEAAGRE LMKAREGRLM  540
AEKRLEEARR EAEGGEDAAA VEKLRKAVQA ERAVGCALQP EALKLADQFQ HQALLLAKQD  600
AHLTDLRTSA EELRGEVAVL TAEKKELQAQ LALLQKANAC TLCVSGKPAS AALMPCGHLY  660
CGTCTAELLP RANGVSARNL TPAMDAPKTE GPSDVVSATT TETGVKVIVE SEGQVVENEG  720
LVRTSRCPCC SVEVQGRLVV QKPAPVDEEM DGAVSLLGLL TSESSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161175RKAFPNLVYPRKSKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HUM70.0A0A1Y1HUM7_KLENI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-11GATA transcription factor 15