PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00107_0150
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family SBP
Protein Properties Length: 1078aa    MW: 113395 Da    PI: 5.4791
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00107_0150genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1041.1e-32539612275
                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS
            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 
                    CqvegCe++l++ak y++rh+vC vhs+a +vl++g+  rfCqqCsrfh+++ fDe krsCr+rL +hn+rrr 
  kfl00107_0150 539 CQVEGCEENLEHAKAYNKRHHVCWVHSRAWEVLIHGVLSRFCQQCSRFHDVRAFDEIKRSCRERLLHHNKRRRT 612
                    ************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-25534600IPR004333Transcription factor, SBP-box
PROSITE profilePS5114126.675536613IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-29538612IPR004333Transcription factor, SBP-box
PfamPF031101.2E-26539611IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1078 aa     Download sequence    Send to blast
MGDAVSKRHA LQTETMVEGD SPVIQGAQPE PAEDARVGDG STVEGGVEGS IAEAESKQDN  60
AAKGDAASIE GPVSAQELGL GDEAERATLV EKAQVGVLEG GRKEGSAEEG ASSAQVVASN  120
PERPGEGGAE DRGGARAEKE GNGAELASEG ANEGQKASDP EERTGPMDAE KGGIASTRVD  180
GPDCAGALEA ARSFGTEGIP AQVESNAGPL VGGPDSGAIA WPFEDGKGEG KGEKAEQETL  240
GQADSVLVAE AEPITKQNAE PKPGEDQSKA GGGDTLDAAF PNAPGSGGYL ARSHPSFNRG  300
KSFGHSPGEE KADTRSLAPS KGDLVLNLVN DLGPIRAGGQ FSSGGILPLT STDQPGAATW  360
QQQLLALQNS GKAGGGEDLA VGPLVRKSEG LSQDLNLTWA GVAEADHASE EVTKNLEAQL  420
AVLQKVAATR FGDKSGAPPS VEKESHEETM RKLKAELASL EQRAAAQNLH KKGGQSVRGR  480
GRGFAELRMA VPPGLNLGAP VSVSGEAVGA STEELLREGS EGGLTRLRKR RRPNGSYNCQ  540
VEGCEENLEH AKAYNKRHHV CWVHSRAWEV LIHGVLSRFC QQCSRFHDVR AFDEIKRSCR  600
ERLLHHNKRR RTILDMGDAA RGSGDVSDKE KEPPPPAKDS AAKVKRARPP PQDTPPKSAP  660
EPDPLARALD TLMKAREQLG GGRTDISRPP PDRLTFSTAP GPPPGTYESN PLNRPGANLL  720
LNPTTPMRHN STELTLSRRT SGFEVLDQVT GRAGGGVNTF PLGGSLAQSF QSPPGEQYPP  780
APMSRQLASV PTGFERLLQT PPRAESAGQG VDRAHSPFLD ILMRSQHALR DPSPQKGFEL  840
TQHRFSQALQ EAEKAQLERP NDLASEVAIR SPLLAAYVPE YDGMRAARAG NNAATNNTAN  900
SSLRSPTYDM LTDFIGGGQR GGGTLPLGFA ERDAGGGQSL FDSGLGMARD HSSAHASSLL  960
RLMSSHVESA SPVKEPTNFL RGLDGPLGLY GLPSQGHVQP PRDQPGSWLA NNDQREQTAA  1020
LHREFQRLIQ SQTRAADLGG GAEGAQAPFA GLSSQLGFQG QEPALGNRGF KLNDWTFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-235396111183squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1526532LRKRRRP
2527531RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HYN70.0A0A1Y1HYN7_KLENI; Squamosa promoter binding protein(SBP) domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.25e-25squamosa promoter binding protein-like 4