PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00101_0290
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 943aa    MW: 102024 Da    PI: 5.0676
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00101_0290genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.9e-11698722226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    kt+lC++f+  G C+yGdrC FaHg
  kfl00101_0290 698 KTRLCQRFSSPGGCNYGDRCLFAHG 722
                    9***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088250.501476614IPR007275YTH domain
PfamPF041461.5E-34477614IPR007275YTH domain
Gene3DG3DSA:4.10.1000.101.9E-14692728IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-8694728IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202696724IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-6696723IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8698722IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.8E-11888938IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.1E-10889939No hitNo description
PfamPF139207.1E-11892938No hitNo description
SMARTSM001843.3E-5895932IPR001841Zinc finger, RING-type
PROSITE profilePS5008911.28895933IPR001841Zinc finger, RING-type
CDDcd001622.02E-9895936No hitNo description
PROSITE patternPS005180910919IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 943 aa     Download sequence    Send to blast
MEEEKPLEWR KIVEILKRKG NELLAAQAAQ AAQLPHAASP PSQEAAHTST EPHSAANPST  60
ASLAEPPQPT GGSAAPPSKK KKKKKKKQAA DSEEKHEEPE SSEPGKPAGG PVTPPFVFTA  120
GANGADEGWV QMPLGGRAVI GTAPPTTNED KSGGVENDAL PGNARVDPGT AAEGEEATKA  180
SLLEAATDRV TPGDVEHSEE APAEPKSKVK KKKKKGKGGK GVGTEGSAPE AEAGSSLQPP  240
RSDPAGSAEE SPAQDEGAER SHASAEAAGS LNLAEDERGK RSEKGAQEWP PEQPTGWSDT  300
EEVPDFVSDS GGSDGEEGER DKSGAPERRE QEEMSGAQGK RGPEDRSDWE ERSDLWEGEE  360
GEGETRSGDE RKKDGDEEWG ELEEDDVEQL LMLGQLREAT KTSKVAPARK KRPAPPAPQK  420
PTQTPSKPPD TQQHRPAAPP TPFRPRGSPS ERVELHLPAG RLIVNRADFD ARPATARFFV  480
IKSNSVDDVH KSIKYGVWAS TPYGNKRLHA GFKEACAADS PAQVFLLFSV NASGKFCGVA  540
EMMSDVDFDT SVDVWQEDNL WTGRFKVHWH IIKDVPSREF YHIRVPSNEN KPVTNSRDTQ  600
DVPYAQGLEM LAIFAASPSV SSILDYFALY DTQQQLLQED RDKAKLRPPP PGKPRTPLAP  660
LDPWDDRPQP PGPGFRPRGP DFFRPPFPRP PLVPHNIKTR LCQRFSSPGG CNYGDRCLFA  720
HGVHELRPFR PPPPAGRPPF FPDGRPAFFP DGRPAFFPPP PFGPGGPHHR PPFWRPDGNG  780
NGMGPGFEGP RPWLGPPPEF AGHGHGHHYQ QQHPASRLLD ALENGNEGLR HGAAGPGGDD  840
VSGDEKDAQD EYLLQLLTEG GADKGQSVPE PGQAPGLGDG SEWAGGREHE DEEVCCICFE  900
RPMDAALEPC RHELCRQCAE LMRSERNSCP VCNAEIESIL PRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rcj_A4e-4846563415180YTH domain-containing family protein 1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886KKKKKKKKK
28086KKKKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HU350.0A0A1Y1HU35_KLENI; YTH domain containig protein