PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00085_0040
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family B3
Protein Properties Length: 601aa    MW: 63980.3 Da    PI: 7.0251
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00085_0040genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31.1e-1653138183
                    EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                    f+k+lt sd++ +gr+vlpk +ae++   ++++e++ +++ed  g +W +++++  ++ks++yvl+    +F +a++L++gD+v F 
  kfl00085_0040  53 FEKALTLSDTSHLGRIVLPKGCAEKYlpPMDEKEGRPIVIEDNYGARWCFRYRFwpNNKSKMYVLE-HSGDFLRAHRLRVGDVVQFC 138
                    89**************************555567778***************9989899999***9.789***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-2551147IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-2052147IPR015300DNA-binding pseudobarrel domain
CDDcd100176.06E-2152148No hitNo description
PROSITE profilePS508639.91153153IPR003340B3 DNA binding domain
PfamPF023621.2E-1353138IPR003340B3 DNA binding domain
SMARTSM010191.6E-1553153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MTRSLQSHQP SEIAGWPTLC RAGGPPGADL PAMLRSTGFR GSGPRSRVQA VLFEKALTLS  60
DTSHLGRIVL PKGCAEKYLP PMDEKEGRPI VIEDNYGARW CFRYRFWPNN KSKMYVLEHS  120
GDFLRAHRLR VGDVVQFCRS ELGHLIVQGK KEAARQAAGL APGGASPRAA PLRAPRELRP  180
PTCKRSPATS RPRRRGARGP LIPHPGVASF DEVRARAREV SMTSEELLRS SREIRAEMRA  240
SLARKEGGGV CSAAPYGSDE ADEQQFEADP QKEQRQGNHE EEEEEQLQGP VGAPGLYDLR  300
AGFSPPRPPS VPPLTGEGPF RLASLYPAHL YSELARSSSP GAVYQPIPRP TPHYLAPPWS  360
GALQASLFPW AGSFAGTPGF GLETGPPAFG GVGLPLGGFN LEAAPPDVTY AGSHERDERE  420
TPTMGEIHEG RWQRPVDAER GEASDDSSRE RAAGNSEEGA QAGQEAGRGD AAATIGRELD  480
EDRHGEVKDS DADGSAGRGA AASGGLQAMP RGAGMDAVEH SLALLSGRGG RDMAEAGDAQ  540
GGGRGARGER QKKPGGAPQQ GWTSETHTEK GLDCVDQQPF LSGTPAPCPK APLFAVLTGK  600
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A4e-275215523126B3 domain-containing transcription repressor VAL1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I0G00.0A0A1Y1I0G0_KLENI; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.15e-26high-level expression of sugar-inducible gene 2