PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | kfl00052_0040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 705aa MW: 76322.1 Da PI: 5.1054 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.3 | 6.5e-17 | 121 | 165 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEde+l +v+ +G++tW+ I++ + +R +kqc++rw+++l kfl00052_0040 121 PWTKEEDEKLSSLVQVHGTKTWAFISKQFS-NRNGKQCRERWHNHL 165 8*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.8e-18 | 172 | 214 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE+++l++++ q+G++ W Ia++++ gR+++ +k++w++ kfl00052_0040 172 VDWTPEEEQKLIQLHLQFGNR-WVEIAKHLP-GRSDNAIKNHWNS 214 57*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.107 | 114 | 165 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-15 | 118 | 167 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.73E-31 | 119 | 212 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 121 | 165 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.43E-14 | 121 | 165 | No hit | No description |
Pfam | PF13921 | 1.4E-16 | 122 | 178 | No hit | No description |
PROSITE profile | PS51294 | 26.652 | 166 | 220 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 166 | 219 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-17 | 170 | 218 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.04E-14 | 174 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010439 | Biological Process | regulation of glucosinolate biosynthetic process | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 705 aa Download sequence Send to blast |
MEKNQDGEFE TEPASEGQAP LATLNVADYL PNFKPAKSEL LQRWFRGGAL SVKGEEQEQM 60 KDKLLAFVQG DDRRGEVHSS KDDSLQGNGS LNVECEAQGE QGDRPGCKEE MDGERSSRAP 120 PWTKEEDEKL SSLVQVHGTK TWAFISKQFS NRNGKQCRER WHNHLSPGLK KVDWTPEEEQ 180 KLIQLHLQFG NRWVEIAKHL PGRSDNAIKN HWNSTARRKD EKSAKATKSD ILRNYISALR 240 DPASAAMLTE PAAEAPSANC LHWTTLQLDS SDSNPTRGIT TLRSQSTQPG SPSSPLELNA 300 TLSLAPAGMI GGLQDTPCRS AVAGALSVLP ADFMGLKGSL LNDVSGLQSL AGLETGSALE 360 KLLAMQQLQQ WQEHQRLKQQ LEHQQQQDAL LRQLYGALQE AQHAQQKAAE QAQQAQLLQR 420 FQEMQAQQKQ AEALDGGCLS LNLAQTNDLS LPLPQSDAHN NLEESWNTDN DPLQLLLGTD 480 SSPPMWNSRQ PEPPLSTVES APAFDSLSYD PPAAAHTDLL STFNFDLLSP PSNPTSGLEL 540 STPALDPQLQ IGANSNSSPL QPEAQHDFAS VLLQNPSPPP QLYSQGLGEL GEVFPTPAAG 600 QKRAREEWSG DLAQPVVKAG PRGPIQWPKD DGTNLQSRYA PGKEGTGLEG IPGERKTGGV 660 GGMYKKGNCI VLTGFIGPGP LGPPGMTAKK PAGVARPAGN LAVPA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-39 | 121 | 219 | 6 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-39 | 121 | 219 | 6 | 104 | C-Myb DNA-Binding Domain |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1Y1HNV6 | 0.0 | A0A1Y1HNV6_KLENI; MYB family transcription factor |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G40360.1 | 4e-37 | myb domain protein 115 |