PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00039_0120
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family MYB_related
Protein Properties Length: 491aa    MW: 52190.5 Da    PI: 8.001
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00039_0120genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-09276318246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +rWT  +   +++a +q+G++ ++tI + ++  R++ q+k+++++
    kfl00039_0120 276 KRWTDADTVVFYKALRQFGTD-FTTIQKLFP-SRSRHQIKNKYLN 318
                      79*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-11267318IPR009057Homeodomain-like
PfamPF159636.5E-28268352No hitNo description
Gene3DG3DSA:1.10.10.601.6E-5271317IPR009057Homeodomain-like
PROSITE profilePS5129310.027273324IPR017884SANT domain
SMARTSM007179.0E-6274322IPR001005SANT/Myb domain
CDDcd001675.94E-6277318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSLSSLRVLD KDVTNAPGRD SAFRPNVKAR VRRGQTGTPA PEAVPAPQAP PLETTARPEP  60
LDAAQRPAPP SGPLSGPARS ARLPPIVEAE RPRGREPAAA PLGALAPPAD PIAPATLPQA  120
AAPPAADGPT QSAGAKRRIP HSTTGGRRRT AFRGGPEVDE HFLATGEVNT AGMTLKDILR  180
MADAKEKERN VDDVRRPPRD EEAEERQARE RSPDEPDVRA LAPQIRVVDG QIVVDQQSLT  240
ASAQASNPVV SHSYRRVEES GSRLNSNTYS NRKPTKRWTD ADTVVFYKAL RQFGTDFTTI  300
QKLFPSRSRH QIKNKYLNED RHHPKAIEAA LNHKSKDSSH YEEMIAQLQT AANAEAEENL  360
ENGAQPDGAQ NRGASGSTGT AQTTASVAAN ASQAAASGVD DVAGTSGRDD DVGELDHVGF  420
PAALVVPSGG SQQGASQQST APTAGGLSQE SQARATGVEG PVREAEASGP LNYLQRSMQR  480
RLERGYRDSA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cnb_S9e-14229359369499Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnc_S9e-14229359369499Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnd_S9e-14229359369499Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6cnf_S9e-14229359369499Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B'',Transcription factor TFIIIB component B''
6eu0_V1e-13229359369499Transcription factor TFIIIB component B''
6f40_W1e-13229359369499Transcription factor TFIIIB component B''
6f41_W1e-13229359369499Transcription factor TFIIIB component B''
6f42_W1e-13229359369499Transcription factor TFIIIB component B''
6f44_W1e-13229359369499Transcription factor TFIIIB component B''
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HP540.0A0A1Y1HP54_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8075913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-15MYB_related family protein