PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00028_0250
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family GATA
Protein Properties Length: 416aa    MW: 44816.5 Da    PI: 5.7657
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00028_0250genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72e-071454438
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    kC+ ++e +++lfC  +++++C++C ++ H g      H+
  kfl00028_0250 14 LKCDVCQEARAILFCPRDRSCFCQQCDFAAHAGaqstacHE 54
                   68*****************************8777777776 PP
2GATA529.5e-17312346135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C +tkTp+WR gp g ktLCnaCG++y++ +l
  kfl00028_0250 312 CLHCASTKTPQWRAGPMGVKTLCNACGVRYKSGRL 346
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.8871158IPR000315B-box-type zinc finger
SMARTSM003360.00411158IPR000315B-box-type zinc finger
CDDcd000211.55E-61546No hitNo description
PROSITE profilePS5011411.807306342IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-14306356IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12308344No hitNo description
Gene3DG3DSA:3.30.50.104.0E-14310343IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.07E-12311366No hitNo description
PROSITE patternPS003440312337IPR000679Zinc finger, GATA-type
PfamPF003201.4E-14312346IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0005622Cellular Componentintracellular
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MLPGSAALPA TDYLKCDVCQ EARAILFCPR DRSCFCQQCD FAAHAGAQST ACHERYALAQ  60
TKITRMPLEK PASMPVAASL PQRVPPGCTP SDEEAFLVDD LLDLSEAKGE SRVDSAFSPS  120
QEQQGQVEQQ REPEREPPSA SGATSWDSEE VGEVGDLCDL PCDDLAELDW LSTFVENSYS  180
SPDGVPLSAP DGGGGLAQGA EHPLKGVGMR SKRQRANPSR TWSAELLIPR DDDLPKRPKF  240
NRSWSTSNLA RPSKPFHRSA IPEAASCSDL SALERACTQS QVGIECEPAP PEPPAGIAGA  300
NFEQLPHPLR RCLHCASTKT PQWRAGPMGV KTLCNACGVR YKSGRLVADY RPAGSPGFAE  360
GNGNKPNYGG KGAPPCPPIA RKKLLIPKAA RRMVPKPKRE FGVEELSGYS CDEMEM
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HL380.0A0A1Y1HL38_KLENI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-28GATA transcription factor 9